AMCG00008881 (LOC103358261,LOC101472065,LOC103037018,LOC100705424,LOC104932892)


Basic Information

Item Value
gene id AMCG00008881
gene name LOC103358261,LOC101472065,LOC103037018,LOC100705424,LOC104932892
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 13866654 ~ 13881491 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008881
ATGAAGGAGAGGAGAAATACACAGCCCCTGAGGTGTAAGCTAGTTTTGGTAGGAGACGTCCAATGCGGGAAGACGGCGATGTTGCAAGTGCTAGCCAAGGACTGCTACCCCGAGACTTACGTGCCGACGGTGTTTGAGAACTACACGGCCTgcctggagctggaggagcagcGTGTGGAGCTCAGTCTCTGGGACACGTCAGGCTCACCGTACTATGACAATGTGCGCCCCCTGTGCTACAGCGACTCCGACGCCGTCCTGCTGTGCTTCGACATCAGCCGGCCAGACACCATTGACAGCGCACTGAAGAAGTGGAAGACCGAGATCCTGGATTACTGCCCCAGCACTCGCATCCTGCTGATTGGCTGCAAGACAGACCTGCGTACTGATGTATGCACCCTGATGGAGCTGTCCAATCAGAAGCAGACGCCCATCTCCCATGAGCAGGGTTCGGCGATGGCCAAGCAGCTGGGCGCAGAGGCTTATTTAGAGTGCTCAGCCTTCACGTCTGAGAAGAGCATCCACAGTGTGTTCCGCACGGCCGCGCTGGCCTGCATGAACAAACTGCAGCCGGCGGCCAAACCCAGCCCCACACGTCGCCTGTCCAAGAGGTTACTGCACCTGCCCAGCCGCTCTGAGCTGCTCACTTCCACCTTCAAGAAGGAGAAGGCCAAGAGCTGCTCTGTCATGTGAGAGGGGTGGAGGGTGGGGTGCTGTCATCAGCAGAGCTGTGCCGAGCCACGCCAGGCCCGGCCACGCcatgggagagggggaggggtggagCGCACACTTGCAACGGGACGCAGGACTCCTCCACCCTCGGCATCCACCTCCGTCCCCTCCTGTTGCCGGGCAGCCCTGGGCCTGCAACTCCCAACCCCTTCCTTCCTCTCCCAGCTGCCCTTCCCTAATCCTACTCCTGCCTGAACTAACCCCTTGCCCCACAGCACCATGCAGCGCCCGACTTCGAGATCCTGCTACAGTGTCTGTGCACATCAGCCAATGAACTTAGTTCCCTGATCCACTGAATTCATTCATTCTCTCCTGTACATTGAGTTAGAACTCAAAGGTACAGTCTGCTGAGGTATATTTTATGGCTTTGTgcagcttttacattttttgtgtaggGGTGGGGGTTAGACATGAATCTGAAGTGCAAGGCTTCTGTGAAAATGGTGAGAGAATGAAACAACAACCGCTGACCGTTTAAAACAAGGGAGTTTCTCCAACACACGTCTTGCAGTTAAAGAGTCTGGAGCAGTGCATGGGGCTTCATCCTTTGGATGGCTGGGGTGGGAGTAGGGGAAGGGGGCAACTTTGGAATTGGctggtgtgcatgtttataCAAAACCAACTTCTCCATCATATATACAGAATGTGCTTTATAGGGTGTGTTGAAGTGGGGGGGAGGGTGCAAGGTCATATCTAAAATGGCTGCCTTGAGGTTTTTAACGGATACCTCTGCGGCGGCGGGGGggggaaatatatttaaaaaaaaaaaaaaaaaggatggtGAGGTGGCAGGGACTGCAGGCTTATCCACCTCTGCTAGTGTGCTGGGGGGGCAGGGATGCAGTGCTGAGTTATGCTTACCTACATCTACAGATCATAGTCAAAACTGCCCCCAAAGCaacaatatttaactttttacacCCCCCCCCAGTTTAACCCTGCAGAGGATCAGAGTAGGAAGATGTTCAGTTGTTTCTATTGTATCTTCATGCCTGTgcaggggggtgtggggggggttctgCAGAGTAATGCATCTGCAGCTATTAGGGTGCTGTCTGCGTGAATGAACTAAGATGCTGAACATGTGGGGACACttaattttgaaagcattgcTCAAccttagtttatttatttgttttataccaAGGCTTTCATTTACCATGaccattttaaatgcagattcattttctcctgctgtatttatttgttgttgtggtgtgtgtgtgtttgttatgttatttaaaatgtatcaaataaagGCGCAATAAATTcctggaggggaggggggg

Function

NR:

description
PREDICTED: rho-related GTP-binding protein Rho6

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07531 RND1; Rho family GTPase 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008881 True 2021 mRNA 0.52 5 13866654 13881491

Neighbor

gene id symbol gene type direction distance location
AMCG00008882 ddx23 coding downstream 26728 13831207 ~ 13839926 (-)
AMCG00008879 NA coding downstream 95264 13737882 ~ 13771390 (-)
AMCG00008878 NA coding downstream 132616 13720710 ~ 13734038 (-)
AMCG00008872 NA coding downstream 223279 13638657 ~ 13643375 (-)
AMCG00008873 NA coding downstream 257706 13585087 ~ 13608948 (-)
AMCG00008887 LOC103368342,LOC104967533,LOC101064836 coding upstream 9789 13891280 ~ 13897417 (-)
AMCG00008891 neurod4,LOC105013535,LOC106567036 coding upstream 135859 14017350 ~ 14021503 (-)
AMCG00008890 NA coding upstream 160282 14041773 ~ 14042907 (-)
AMCG00008904 NA coding upstream 503078 14384569 ~ 14389388 (-)
AMCG00008907 NA coding upstream 508698 14390189 ~ 14393018 (-)
G52157 NA non-coding downstream 36339 13823113 ~ 13830315 (-)
G52131 NA non-coding downstream 89725 13771560 ~ 13776929 (-)
G52019 NA non-coding downstream 410802 13373383 ~ 13455852 (-)
G52041 NA non-coding downstream 427028 13438088 ~ 13439626 (-)
G51965 NA non-coding downstream 566371 13299338 ~ 13300283 (-)
G52214 NA non-coding upstream 124236 14005727 ~ 14006439 (-)
G52233 LOC101154678 non-coding upstream 245748 14127239 ~ 14127501 (-)
G52296 NA non-coding upstream 390483 14271974 ~ 14275087 (-)
G52314 LOC105897838 non-coding upstream 479442 14360933 ~ 14365179 (-)
G52308 NA non-coding upstream 492100 14373591 ~ 14378330 (-)
G52099 NA other downstream 179917 13685335 ~ 13686737 (-)
AMCG00008860 NA other downstream 541427 13316867 ~ 13325227 (-)
G51974 rps26 other downstream 557229 13307422 ~ 13309425 (-)
AMCG00008853 ARF3,arf3,arf3a,LOC106921537,LOC102781726,LOC106954774,LOC104956878 other downstream 604832 13257698 ~ 13261822 (-)
AMCG00008844 NA other downstream 682298 13135732 ~ 13184356 (-)
G52187 ptges3a,ptges3,LOC107745455,LOC107570321,LOC108433158 other upstream 56960 13938451 ~ 13983893 (-)
AMCG00008918 c1ql4b,LOC107673443,LOC107711019,LOC108440793,LOC107585204,LOC108271740,LOC107667333,LOC108432462,LOC100702077,LOC103376602 other upstream 812339 14693830 ~ 14715322 (-)
AMCG00008923 NA other upstream 959216 14840707 ~ 14865988 (-)
AMCG00008934 NA other upstream 1150856 15032347 ~ 15057206 (-)
AMCG00008951 ap2a2,LOC106587467,LOC106562310 other upstream 1588183 15469674 ~ 15505517 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000001_10093069_10104108 RND1B, RND1, RND1A coding CI01000001 null 10092902 ~ 10105699 (+)