AMCG00008884


Basic Information

Item Value
gene id AMCG00008884
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 13942823 ~ 13948990 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008884
ATGCAAAACCTATTTCCACTGGTGCCAGAGCAGAGGCAGCCTGCTAGTGCAAAGTGGTATGACAGAAGGGACTATGTCTTTATCGAATTCTGTGTGGAAGACAGCAAAGACGTCCAAGTAAAATTTGAAAAATCCAAACTTGGTTTCAGtTGTCTTGGTGGTACAGATAACATCAAACATCACAATGAAATCGAACTTTTTGAAGCTATCGATCCAAATCTTAACTGGCTCAGTGTTGACTTCAATAACTGGAAGGACTGGGAGGATGATTCAGATGAGGAATTGTCCAGCTTCGACCGCTTCTCAGAGATGATGAATACCATGGGTGGAGAGGATGAGTTGCCAGAAGTGGATGGGGCAGAAGATCGGGGGGCCTGGGGGTCTGCCCCTTCCTGCCAGGGTTTTAGGCCCAGATCACCACGAATCGGAGCCGACTGGAACATCTCAGAGTGCAACAACTCTgaGGAATCGGCAGATAGCGATGATGAAAAAATGCCTGATTTGGAGTAAACAAGGAGTATAGGAATCCTTATACAGTTGGAAGAAAGAATCATCACAAAACTgttaataataaagaagaaatcaaaaaacaagaaaaacatgtttagatTTGAGTTGGTAGCCATGCGATAAGAccattgtttttccattatttttttttaaagccatttaCAACCATTTGAGAAAAATGCATCACTGAGGGTTGATATACATACCACAGCACTGTCCAGTCTGCACACATCCTACAGTgctgatttttcttctgttctgttGTGCATGGACTGTTCACTGAGTCTTTATGCTGTTGTGAGGTTTagtcatttattaaatttaaaaaaaaaaacacccaaaataaatcaaatcagaaCTGGCAGTGGTGAGAAATGTGCAAAGAGGTTTGAACCTGAATAAAgtaataaacttttttttaattattattttttaatgttttgtggaGATCAGTGAGGCTCTGTATTCATTGAAATGTCAGTGGCCTTTGCTGATCAACAAACCAAATGCAAGCTAAACAGTGAAGAATTAcacctcttttcttttctacttCAATAAAGTTGTCCTGCCCCCCCTTCAGTCAGTGGTGTTTGTGGGGTGAtctgcagaacctctgtccatTCTTTTGATGTAATGAGTCTTAGCTGAAGTATAAGAGAAAAcagttttcttaaatgtgttttacagttgCAGGTAATGTTCATAAACATTTGTTAGTATcataaaatacagcattttaaatactgggGCTGTAGTTTTATTTTCCGCTCTGCTTTGTTCTTAAGGGTGCCTGGTTTTCATACTTAATCTGTTTGTGCCAGTGTGgtggtttttaattttgtttgttttgtttttggtgggggttgtttttcttccacaatCCCCATTCTCCCCCTTGTTTTTAGTATTCAGTTTAAGTTTTGCTGCTTTAAAAACTGTACACGTTCCAGACGTCACTTTAACATGTCCAGTATATATGATATCTACTCCACAGAGTAACAAAGCTGTTTGTGGTGATTCGCTCCCATTCATTGTTTTATACGGCATTGAGAAGCAGGAATTGGGACATTGTGGATTTCTTTCTTCCATATGTAAGcgaaaattacaaacaaaaaatacatgtcCAGATAAGGTGCAGCACAAAGAAGCCTGTGCATTTGGTGCTTGTTTAACCCTCCCTCCACGCCAAGTGGAGACGCCAAGGGTTCCAGCTGTGCGTTTTGTTGCTTCTCAGTCGGAAACGGAAGAAAAAAAGCGATTGTAGATGACCAAACTGTATTTGCACTGTCAGAATACAAATGCaagagtgaagaaaaaaaaaaaaaagataatacacTATTCCTAGTATGTATGTCAACCTGTCAGCTGCCAGCAGGCTGAAAGTCTTCAGTTTATGTTGAATGCCGTGGGAAATTTTTTTATTGTCTACATCTTTCTAATAAACTGTCTAAGACtcatatttaatttctgtatgtctgtctgcagtttctctGTGTACAGCTGGTGGAgattcatcttttttttgttttgctgttcaGCTGTGGCCTCCCTCTTTTTTTAGCTATGCTGGTTGTGTGATGCTCGATTGAAACTGCTATCTTAtaaatgcattgtgtgtgtgtgtgtatgtatatatatatatacataatgtatttatcaaGTTTGACATATACAAACTGTATATAAGGAGATACCTATCACATCTTTGTCAGTCTTTTTTGCTGCTTTTTGCAAAATGTGCAATTTCTTAACCAATTATACCACCTGATGATCGCAGCCAAGTGTGCTAGatagtatatacacacactcacattttTCGTTCAAGAGCACACTGACTTGTTGGCCCCTGTCTACCTTTCGGTGGGTGCAGTGCTTACTGTGTGTATAGTGGCACCTAGTGGGTAATATCTGCCCAGTTCCTTGTTTCACAGAGGAAGCAATGATGTAAGTTCCCAAAGCTTTCCATGTGAGAACAAGGGTCTGCCATGAAGTTTAAatgttctttctctgtctcttaaATCCCagactataaaaataaataaattgggtTTCAAATTGAGTCACCTTGGTAGagggtgttttgtgtgtgtgtgtgagttgtcAGACACTGCAGGTGTCCTGTATGATTTTTCCTTCACGTTCACACACTGTTCCCTTCCAACATATCCCTTATATAAGCccagagtgagtgagtgagagagagatgtaatCACTTATTTCAAAGAATAAAGTCAAACTGCTGAATAAACAACACTGAATTTTGTTGAAATCAGTCATGCAGGCTTTAGTGAGGCTTTTCACCCAACAGCCAGCACATTTTCATGGATGGGTGTCTGGTGGAAATGGACGGAGGGCAGCCCCAGAGATAGCTGTCTGTATGATGTCTCTctcacagctgctgctgcagagatGCCAGTTACACCACACCCCTCCTGCTGATTGATGTTAGACGAACAGATGGACAGGAAGTTACCTGTACACACCCTGTGTACCAATGCAGGCTGACATCTTGGAAGCCATTGTTGTggatttaatattattatcaataatagtAGTAGGCTGACTTGAGCAATGAGCAGCAGTGAAGATATGTGAAGGTGTTTTTCTGGAATGTTTTTGTACTATTTCATAATAAAGGGACGGTTTAAAATCAAAcatcaaaaatcaaacaattacTTATTCATCGAAAATAGTGTTAAACGTAATATGTTAAACGGTTCAGCAGATTACAGCTTGTGaaaataatctatatatatttatctagtgttattttgaatttatgtAATAATTTGTCATTCCCATCAAATACAACAATGTTTG

Function

GO:

id name namespace
GO:0016853 isomerase activity molecular_function

KEGG:

id description
K15730 PTGES3; cytosolic prostaglandin-E synthase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008884 True 3330 mRNA 0.39 8 13942823 13948990

Neighbor

gene id symbol gene type direction distance location
AMCG00008886 LOC107737655 coding upstream 21196 13906302 ~ 13921627 (+)
AMCG00008885 NA coding upstream 38068 13899291 ~ 13904755 (+)
AMCG00008880 cacnb3a,LOC107724200,LOC107696997 coding upstream 119767 13815425 ~ 13823056 (+)
AMCG00008876 NA coding upstream 204739 13734974 ~ 13738084 (+)
AMCG00008877 NA coding upstream 222574 13688767 ~ 13720249 (+)
AMCG00008883 NA coding downstream 8378 13957368 ~ 13983630 (+)
AMCG00008888 LOC107384035,LOC106518043,LOC108235781,LOC101174339,LOC108276103,LOC105937045,LOC103465370 coding downstream 36181 13985171 ~ 14006013 (+)
AMCG00008889 NA coding downstream 58608 14007598 ~ 14013737 (+)
AMCG00008893 LOC107695795,LOC106567037 coding downstream 140663 14089653 ~ 14092404 (+)
AMCG00008892 LOC103385083,LOC103368464,LOC101482250,LOC101064460 coding downstream 154361 14103351 ~ 14109000 (+)
G52100 NA non-coding upstream 255043 13686839 ~ 13687780 (+)
G52044 NA non-coding upstream 465845 13476750 ~ 13476978 (+)
G51970 NA non-coding upstream 627771 13313590 ~ 13315052 (+)
G51969 NA non-coding upstream 630365 13311329 ~ 13312458 (+)
G51968 NA non-coding upstream 632050 13309616 ~ 13310773 (+)
G52234 NA non-coding downstream 179497 14128487 ~ 14128691 (+)
G52361 NA non-coding downstream 593649 14542639 ~ 14545754 (+)
G52364 NA non-coding downstream 603906 14552896 ~ 14553241 (+)
G52372 NA non-coding downstream 611729 14560719 ~ 14561249 (+)
G52374 NA non-coding downstream 613455 14562445 ~ 14562710 (+)
AMCG00008856 rps26,RPS26,LOC106567051 other upstream 633393 13306495 ~ 13309430 (+)
G51939 NA other upstream 685183 13253814 ~ 13257640 (+)
G51928 LOC108272117,LOC107678215,LOC107581315,LOC107713111,LOC107551923 other upstream 717877 13222320 ~ 13224946 (+)
AMCG00008837 march9,LOC107664138,LOC107593952,LOC107714987,LOC106583285 other upstream 950098 12980804 ~ 12992725 (+)
G51812 NA other upstream 1016029 12925238 ~ 12926794 (+)
G52349 NA other downstream 532931 14481921 ~ 14483255 (+)
AMCG00008910 NA other downstream 578828 14527818 ~ 14542248 (+)
AMCG00008917 smarcc2 other downstream 789459 14738449 ~ 14754644 (+)
AMCG00008920 NA other downstream 834053 14783043 ~ 14795184 (+)
AMCG00008919 zbtb45,LOC104952775,LOC105021497,LOC101077905,LOC102207372,LOC101487628,LOC102796714,LOC100704009 other downstream 858307 14807297 ~ 14811757 (+)

Expression


Co-expression Network