AMCG00008885


Basic Information

Item Value
gene id AMCG00008885
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 13899291 ~ 13904755 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008885
aaaatattgcacaaaaaaACCCCTATCTTTGATTGCTCTAAATGTGAGGTGCTTCCCAACGACGGATCCCTCATTGATCTCGCAATATGGAGATCTGAGCCAAAAGACTCCATATCCCAAGCACCCCTggggttgtgttgtgtttcctgCGTGCCTGCTCGACTTCCTGGCTCCTTTTTCCCGCGCAGGTTTGGACTGTGCAGCTGCTGCAGAATACACTGTGCTGTAAAATTAGGGTAATTTTTAAACATCCAGGATTGAACAATTACAGAAATGCAGAAGATAACATCCGCCAACAATTATGATCAGGCCAGCCTGCCGGACTTACTGCCGCTGTATTACCGGCGTGTGTTCCCATTTTCGCAGTACTACCGCTGGCTCAACTACGGGGGTGTGACGAAGAATTACTTCCAGAACCGCGAGTTTTCCTTCACTCTGAAAGATGACATCTATGTGCGGTACCAGTCTTTCGGCAGCCAGAGCGAGCTGGAGAAGGAGATGCAGAAGATGAACCCGTATAAAATCGACATCGGCGCCGTCTACAGCCACCGGCCCAGTCAGCACAACACCGTGAAGTCGGGGTCCTTCCAGGCGCTGGAGAAGGAGTTGGTGTTCGATATTGACATGACTGACTACGACGATGTGCGGAGCTGCTGCAGTGCTGCAGATATCTGCTCTAAGTGCTGGACCCTGATGACCATTGCAATCCGTATCCTGGACAGAGCACTGAGAGAGGATTTCGGCTTCAGGCACCGTCTGTGGGTGTACTCTGGCCGGAGAGGGGTGCACTGCTGGGTGTGTGACGAAGCCGCTAGGAAACTCTCGGTGACGGCACGGTCCGCTGTGGCTGAATACCTGAGTCTTGTCAAGGTGAGGagaggggaGGAGTCACTGGCTGTGATCGAGCCCTACTTTCCAAGCTATGCTCTGGACAGTCAGGACATCCTTGGCAGTAAAGAGTCTGTGGAAAAAGTGCTAGCGCTGATGCCAGAAGATATCCTTTGCCAGTCCCTGATCAATCCAGCCAGGAAAGAGCTGCGAATGGACTTTCTACAGGAGACCAGTCCAGCGCGGCGCTGGGCTCTTATACAGTCCTGGGTGGAGCGTAAACAGGTCCTGGGGAAGAAAGCGCAGTTCCCAGACAAGGAGGTGATGCTGCAATACTGCTACCCCCGGCTGGACGTCAATGTCAGTAAAGGAGTGAACCACCTGCTGAAGAGCCCCTTCAGTGTCCACCCCAAAACAGGCCGCGTGTCCGTGCCCATTGACCTGCGAGAGCTGGACCAGTTCGACCCCTTTGCCGTCCCCACGATAAGCTTGATCTGCCAGGAGCTCGACCGGCCCCGGCcgggtgaggaggaggaggacacgATGACGAGGGACAAGGAGAACGAGTCGGAGTCGGGGGAGAAGAGGCGTGCTCGAGACTACAAGAAGACAAGCCTGGGCCGGTATGTCAAGGTGTTCGAACAGTTCCTGGAGGGGCTGGAGCGCGCACGCCGGGGGGAGCTGTTGCGGAGGAGCGatctCCAAAGggatttttaattctgtgactTGGAGCTTCCAGTTGGGGACATTCTGACACAGAACACCCAAATCGGCAAAGGATAGAGCGACAGACGGACATGAAGAGCTCGGGACTTGCGAGACTAACTCCCTGGACCTCCTCCTGCGGGCACCAAACAGCAGTAGGTGCTGCCTGTGTGCAGCTGACCACTGCTGACCAACTCACCGTGCCGTTTACCAGACCAGTCACTGCAGCACTGGTCTGGCTtagccatttttgttttatatacacacagccccctgccatattaaaatgagcgcCTAGTTCctacaaatataaatgtctcCTCTGTGTGAGTGTTAAATTGTTCCAGGTAcaggtgtgcctgtgtgtgctcAGACTTGTGCCTGgtgttttgtcagttttacatCTCCCACTGCCCTGTAAATAAGACTTGTGCATGTGTTCCGTCACAAGGACTTCCACACTGCTCTGTAAATATATGATCTACTCTTGTGTTGTCATCTTGTGGGACAGGTTTGAAATGTTTCCTTCAGTCTGGATGATTTATACTACCTGTAGAGTACAAtggttgcttgtttgttttgatctgcaatggtaaaacaatgtaataaaacaaaatgtgcctagtttgttttcttcaataaaactgaactttaaaaaaacata

Function

GO:

id name namespace
GO:0006269 DNA replication, synthesis of RNA primer biological_process
GO:1990077 primosome complex cellular_component
GO:0003896 DNA primase activity molecular_function

KEGG:

id description
K02684 PRI1; DNA primase small subunit

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008885 True 2197 mRNA 0.52 12 13899291 13904755

Neighbor

gene id symbol gene type direction distance location
AMCG00008880 cacnb3a,LOC107724200,LOC107696997 coding upstream 76235 13815425 ~ 13823056 (+)
AMCG00008876 NA coding upstream 161207 13734974 ~ 13738084 (+)
AMCG00008877 NA coding upstream 179042 13688767 ~ 13720249 (+)
AMCG00008875 NA coding upstream 213386 13684568 ~ 13685905 (+)
AMCG00008870 NA coding upstream 261045 13629173 ~ 13638246 (+)
AMCG00008886 LOC107737655 coding downstream 1547 13906302 ~ 13921627 (+)
AMCG00008884 NA coding downstream 38068 13942823 ~ 13948990 (+)
AMCG00008883 NA coding downstream 52613 13957368 ~ 13983630 (+)
AMCG00008888 LOC107384035,LOC106518043,LOC108235781,LOC101174339,LOC108276103,LOC105937045,LOC103465370 coding downstream 80416 13985171 ~ 14006013 (+)
AMCG00008889 NA coding downstream 102843 14007598 ~ 14013737 (+)
G52100 NA non-coding upstream 211511 13686839 ~ 13687780 (+)
G52044 NA non-coding upstream 422313 13476750 ~ 13476978 (+)
G51970 NA non-coding upstream 584239 13313590 ~ 13315052 (+)
G51969 NA non-coding upstream 586833 13311329 ~ 13312458 (+)
G51968 NA non-coding upstream 588518 13309616 ~ 13310773 (+)
G52234 NA non-coding downstream 223732 14128487 ~ 14128691 (+)
G52361 NA non-coding downstream 637884 14542639 ~ 14545754 (+)
G52364 NA non-coding downstream 648141 14552896 ~ 14553241 (+)
G52372 NA non-coding downstream 655964 14560719 ~ 14561249 (+)
G52374 NA non-coding downstream 657690 14562445 ~ 14562710 (+)
AMCG00008856 rps26,RPS26,LOC106567051 other upstream 589861 13306495 ~ 13309430 (+)
G51939 NA other upstream 641651 13253814 ~ 13257640 (+)
G51928 LOC108272117,LOC107678215,LOC107581315,LOC107713111,LOC107551923 other upstream 674345 13222320 ~ 13224946 (+)
AMCG00008837 march9,LOC107664138,LOC107593952,LOC107714987,LOC106583285 other upstream 906566 12980804 ~ 12992725 (+)
G51812 NA other upstream 972497 12925238 ~ 12926794 (+)
G52349 NA other downstream 577166 14481921 ~ 14483255 (+)
AMCG00008910 NA other downstream 623063 14527818 ~ 14542248 (+)
AMCG00008917 smarcc2 other downstream 833694 14738449 ~ 14754644 (+)
AMCG00008920 NA other downstream 878288 14783043 ~ 14795184 (+)
AMCG00008919 zbtb45,LOC104952775,LOC105021497,LOC101077905,LOC102207372,LOC101487628,LOC102796714,LOC100704009 other downstream 902542 14807297 ~ 14811757 (+)

Expression


Co-expression Network