AMCG00008887 (LOC103368342,LOC104967533,LOC101064836)


Basic Information

Item Value
gene id AMCG00008887
gene name LOC103368342,LOC104967533,LOC101064836
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 13891280 ~ 13897417 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008887
cagtTACCATGTCAAACACTTGAAATTGCTTATCCCACAATGTAATcgtgtgtggcagtgtgtagTATTGAAGTCTGACACATGTATCTGTGTCTTTTGTGTAAACTGGGCTGACAGTACAGCTGTACCGCTACAACAACACTGCAGCACACTGTAGCGCCCGGCCGCTGTCagcgctgagagagagagagagagagagagagagagaagtgaaagCAGGGTCCTTCACAAGTATCACTTCCCACTATTGGGGCTGGACCTACAAACGCTAATGCCGGTGGTAACGTTGCTTTGTTTGGGTGTTCATGTGTGTGGTGTAGGCGTGTAGAAGCCTCTGCTTTCCAATGCACTGTGAAACCCTGGTTGTTAGTGTGTGAATGCAGCCTATTTAAAGCAACACGCTCCGTGGCGCAGGCTTCACAGTGCAGCCATCAATAGCAGGCAATCCCGTGCCTCTGTGGTGGTGGAGTCCAGCTGACGGAAAGGCCGAGAGATTGTGCAGGTACGTGACTCTACCCGGCGGGGTGATTGTTTCTGCAGGGTATTAAACATCATTGTGGTTATGATGATTGAGTCCCGGGTCCCTCGGTTGCTTGTCCCCGTCTGACAGCGGCGGCGGTCGGCGGGGCCGCCTCGCACACGATGCGCCCGTCCGGTGTGTGTGATCGAGCCGGACACGCCGAGGTGTCAGTGTCGCTCTGTTGTCATTTCTTTAACGGTCCGTCTGAGACAGTTGCCCCCGTCGTCTCATACACGCCCCCTCCACCGCCCCTTTTACAGTTTCTACAGCGAACAGTTCCTTTGTTTGTCCGGAGTTTTTCAAATCCCATCAAACCCCCCGATGTCCTTTTTAATAATCACAGACAGtcaaatgttataataatatagtaaaGAAAAGTAGCTATTACGAATGTGTTTTTCAGAGAAGACATTGAGCTCATCTCGTTCTTTATCAGTTTTACACGAGACGATAATTATATGTACAACTCgtacagctggtttcacagagctTGACTGGCACTAGTCTGTGACTGCTCTACCTACAATAACATCCAAGACCAGAGCAAGTCTGTActggaataatgtattttaaaattgagttaatttattatcattattgtcattgttatttgcCTAATGTTGTATGTTAgtgtgtatattaatttattataatgatgatattGTGTAATGTTATTTCTATGGGGAAGTGAACTTACACAGATGCCAGTAAAATCCTGTCCTCCACGTGTTCCCTTACGTGTAAATGAcccaacccccccaacacacacacccttgcCACCTCACCCTAGTGGTGCCCATCCTCCGACGTCACAGGGCAGGTGGGGATTTGGacaattaaattactgtaaattaCTTCCTGTTAACTGTTGAACTTGTAAAGCAGTGGTGGGCATCCTGTCTGCATTTTATAGTTTgtgtctgttctttttttattctgttgttgGTTTTCTGCAAATCTTGACTGTTACAACATTGAAGTGGAAACCATCAGGTTTGCAGATTGTAAGGATGTGAAATGCAACCACCTTACTGTAGAGTTTGTAGAGAACTGAAATGCCTTGCTGGGGCCACCCAGAGTCTGAGATAAGTGGGGTGTTGGGGGTCAGGCTTCAGACCAATGACGTTGGTATTTGCTTCAattgtgttttccttgttttgccCCTCCCCCCGTGGTGGCGCTGCAGTGTCCTCGGCGGCGATGAGCGTGCGCGCGGGGCGGGGCTGTGATGAGGTGCTGCTGTCTCCAGCCATGTGGGACTACCTGTCGGCTGGGGGAGGGCAGACCTGGCTGGCGGATTTCCAGGATGGGCACGGACTGAGCGTCAGCGTGGTGCGCCGCGTGGACAGGAGTGGCTGCTGCACCGTGCGACTGCGGCCAGTGGAGGCCGGTGCTGGGGCTGGGGCCGGGGCCGGGGCTGGGGAGCCATCAGTCTCCCCTGCCACACGGAAAGCATTCATGGAACTGTGCCGCAATGCCCGTAAGGAGATGAACAGAAAGGAGGGGGCGCCCAAGCGGAAGCGCTCTCTGCTGCcctgtgtgggtgggggggagaccGACAGTGAGGGCAGCCTCCTCCCGTTGCCCCAGCCGCTGCCCCCCCTGCCCCCGCCTGCCCCGCCCCCCCGACGCTCCCAGAGGCAGCAACTCCGGCGCAAGAAGTCTGCAGACCTGGGTGGCAGTGGGGCAGGGGTGGGCCAGGACCTACAGCCCATGCGGGAGGCGGAGGTGGTTGCTGTTGGCGTTGCCATGGGAGTCAGTGTGGGCGTCGCCTCGCCAGCCGAGGGGGAGGATGGCGGCACCTGCTCCATCTGCATGGGGGACATGATGGACAGAGCCACACTGGAGCGCTGTGGACATTCCTTCTGCCGATCCTGTCTGGACCGCGCCTTCCAGGTGAAGCAAGCCTGCCCAGTGTGCCGGCTGGTGTACGGGCAGCTGATCGGGAACCAGCCAGCCAATGGCACCATGCTGGTGGAGCGCgagccggagctggagctgccCGGCCACGAGGGGCATGGCTGCATTTGCATCATCTACAGCTTTCCCCCCGGCACACAGGCGCAGGAGCACCCAAACCCGGGGGTGCGCTACCCAGGCACGGAGCGAGTGGCATATCTGCCTGACAGCCCTGAGGGCAACCGCGTCCTGGCACTGCTGCGGCGCGCCTTTGAGCAGCGGCTAGTCTTCACTGTGGGAACCTCCATGACCACTGGGATGAGCAACGTCATCACCTGGAATGACATCCACCACAAAACCTCCATCTGGGGCGGCCCTCGCTGCTTCGGGTATCCAGACCCAACGTACCTGGTGCGGGTGACTGAGGAGCTGCGAGAGAAGGGGATCACTGTGGAGTGAGGAGGGGGAGCAAGAGGAGGCTGTGATTTCTGCTGGGTCGGGGAATGTAGGAACACACAGGGGACCCTCTGCAGCTGCcgccccccccatccccccacccccaactgCTCGCTGCCGCTGCTGTGgctgttttaaaaagtaaacacacACGCAGACCAACCTAGAGACacttgtgtgcctgtgtgtgcgtgtgtgcggcTACAATTTTGGGGGAATGCTCTGCGTGTCAGTGCCCCCCTCCATCTTGGctgtttcagttattttcctTGGGGATGGGGGGTAGGGTCAGGGTTTTGAGGGAcacatgctttgttttgtttgtttgtgtgatttgttaTCTTCCTATTGTGGTCGCAGGATGGAGGGGCTTGGCTTTCTTTGTGCTGGACAGGGATGGCTGCCGGAAGGGGGTTTGGAGAGTGGTAGGCAGAAGTTTTGGGAGGTTGTTGTATGGCTGTGGTGGGACAGCAGGGTTATGTTGTCTGACCCCGACTGTGGACAGGCCTGCCAGACAAACATCATCAAAGCAGCCAGCCAGCCTCTAgtctctcccctctcccatctcccatcctctgtctcctctctcgtctctctcctcttccctctgCCTGTGTGCTTCCAGCTGCTTCTGAGGTCCAGCACAGCCTCGATCAGGGGCGGGGCTGCTGTCTGCTCGACCGTGAGAAGCATGGGGAGCACGTTGGCCATCTGGGGCTCGGACAAGGTGTCCCACCACTGTGTTCCCCTATTCCGCAGTGCAGGGCAGCTGTGCACAGGACTGgccgtctccccctccacagACCATTGGCGACAATCAGAAAGGTTCTGGAATTCTCAATGTCCTGCCCCCCGAGTTCCAAATGGAGGACACATGACCTTTCtttttgatcatttatttatttatgtatctactTTCTCCTCTCTTCCCTCTTCCATCTTTGATATATGAGGATTCCATTTCCAGGTCAAGGGTGTTCCCAAGGACTCTTTCCTGGGGTCCGAGCGTCTCCCCAGGAGCCCTGCGCTTCCGCCACTACCCAGCGCTGCTGCGTTTTTCATTAAGCTGCTCATCCTGATTTATGTGCAGAAACAGAAGGTGCAATATAATATAGCTGAATATCTTGGTGGCGTGTGGGGAGAGCGGGTGAAGAGTTGTTGTcgttgaaagtgttttttttggggggtttgctTTTTCACAGCACCTATCATGTTTACACAAAAACCCAGTGTCCCCTCCGCTCTCCCCTTTGCCAAGCTGGAGatgtctgttgtttgtttttaaagttgttcATTTTGGAGATATGGGCTTGCAGAGAGCTGCAGTTCAGTGTATTAAGAGACCCGGTGGCTGTcaatcagtctgtctgtctctgagagagaactagagagagagagagagacggagagtgCTGGTGTCAGGTGGGACAGGATCAGGTGGTGCTTGTTGGTGTGTGCGGTGGGAGCCGTGAGAGAAGTGCGAGATGAACTGTTGGAAGGAACAACCCCGTCTCTTCAGTGCCTTATCTGCTCAGTGTGAGAGAAGagtgttatgattattatgagtCTGTCCTTGTTTCATCTCCTTGCTTCACACTGGCAATAAATAATCATTCTGAGGTGCTTTCCCTGGGTCGTGCAATTCAGAGTGTGAAATCCCCGAACACCTCTCTCACAGAGGTGAAACCCAGATTGGAGCCCCCCCCtcttaaatttatttaaaaaaaaataataaataataaataaagctgcCCCACATAAAGTGACCATGCGAAAATAGCTCTGTGTGGGCTGCCAGGAAGGGGGCAGAAGGAGGAGGGATTTGGTGTTGCACCGTGCTGTCGTTCTgtagtgttattgttgtttagtTGTTCCTGGGTTCAGGTTGGCACTCTAGGAGTGAGAGTGGTTTAAGAACAAGAGTAGGAATGAaaagggagagcgagagagagagagagagaggaggtggaACAAAACTGTCTTAGGATCCTCCGCTATCGTCGTCAGCGCCACGATTGTTCTCGGTGTCTGGCTTTAAccgctatgtatatatatgttctttTCTGTTCCTTAACCATTACGGGTCCTGTATTTGATGTGGAATTAGCAGGTCATGCGTTTTCCAGTGTGGAGGTCAGGAGGTTTGAGTATAGGTTCCTTTTTTGAGTCCTGGCTCCACCCCCTGTCTGCCTACCTGCCTCATGGTGCATCTCCCACTGGACCTAACTGAACTGGACCGGACAGGccaggactggactggacctCGTTGTGCTGCGTCTTTGGGCCGAGACATAAAGCACAGGTCCTGATGTCAGAGACTCTGGAGCGGCAGCTTCACTGATGCTGCTCTTTTCACCTTCACCACTGCCTGTGAGTCTGTTTGGATAAAAGGATGTACGAAGTtaattatattatgatttttattattgttatgggGCTGAAATCTTGAGTTGTATGGAGGTCACcctatatatagatgtatatttcCACTCATTGACATATTTGGAAAGTCATTAAGGTAATTTGACAGTTTCAAATCGCCAAGCGTTGCATTTCATTCAAAAGCAAGGGATTGTCTACTTCAGAATGTGtcgttattgttattattttaatttttattattttgttgtcacagttctgttcatttttgtaaagggaccaatacaaatgtttgtAGAGACGAGGCGTATGGAGAggtgtccacacacacacacacacacactacatctTCACTTCAGATATTTCTATGCAGTATAAGAATTTAAAACCATACATTAtaatggaatacatttaaacatatagAGATACTTAAACTAAATTGCACATTGTTATGGAGTAAAATTCTGCTTTTATAGTTGTGTTGATTTCTATTTTTGACTGAAACttctttattatgattattatgattatga

Function

NR:

description
PREDICTED: probable E3 ubiquitin-protein ligase DTX3

GO: NA

KEGG:

id description
K06058 DTX; deltex

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008887 True 5787 mRNA 0.51 3 13891280 13897417

Neighbor

gene id symbol gene type direction distance location
AMCG00008881 LOC103358261,LOC101472065,LOC103037018,LOC100705424,LOC104932892 coding downstream 9789 13866654 ~ 13881491 (-)
AMCG00008882 ddx23 coding downstream 51354 13831207 ~ 13839926 (-)
AMCG00008879 NA coding downstream 119890 13737882 ~ 13771390 (-)
AMCG00008878 NA coding downstream 157242 13720710 ~ 13734038 (-)
AMCG00008872 NA coding downstream 247905 13638657 ~ 13643375 (-)
AMCG00008891 neurod4,LOC105013535,LOC106567036 coding upstream 119933 14017350 ~ 14021503 (-)
AMCG00008890 NA coding upstream 144356 14041773 ~ 14042907 (-)
AMCG00008904 NA coding upstream 487152 14384569 ~ 14389388 (-)
AMCG00008907 NA coding upstream 492772 14390189 ~ 14393018 (-)
AMCG00008911 NA coding upstream 594753 14492170 ~ 14495264 (-)
G52157 NA non-coding downstream 60965 13823113 ~ 13830315 (-)
G52131 NA non-coding downstream 114351 13771560 ~ 13776929 (-)
G52019 NA non-coding downstream 435428 13373383 ~ 13455852 (-)
G52041 NA non-coding downstream 451654 13438088 ~ 13439626 (-)
G51965 NA non-coding downstream 590997 13299338 ~ 13300283 (-)
G52214 NA non-coding upstream 108310 14005727 ~ 14006439 (-)
G52233 LOC101154678 non-coding upstream 229822 14127239 ~ 14127501 (-)
G52296 NA non-coding upstream 374557 14271974 ~ 14275087 (-)
G52314 LOC105897838 non-coding upstream 463516 14360933 ~ 14365179 (-)
G52308 NA non-coding upstream 476174 14373591 ~ 14378330 (-)
G52099 NA other downstream 204543 13685335 ~ 13686737 (-)
AMCG00008860 NA other downstream 566053 13316867 ~ 13325227 (-)
G51974 rps26 other downstream 581855 13307422 ~ 13309425 (-)
AMCG00008853 ARF3,arf3,arf3a,LOC106921537,LOC102781726,LOC106954774,LOC104956878 other downstream 629458 13257698 ~ 13261822 (-)
AMCG00008844 NA other downstream 706924 13135732 ~ 13184356 (-)
G52187 ptges3a,ptges3,LOC107745455,LOC107570321,LOC108433158 other upstream 41034 13938451 ~ 13983893 (-)
AMCG00008918 c1ql4b,LOC107673443,LOC107711019,LOC108440793,LOC107585204,LOC108271740,LOC107667333,LOC108432462,LOC100702077,LOC103376602 other upstream 796413 14693830 ~ 14715322 (-)
AMCG00008923 NA other upstream 943290 14840707 ~ 14865988 (-)
AMCG00008934 NA other upstream 1134930 15032347 ~ 15057206 (-)
AMCG00008951 ap2a2,LOC106587467,LOC106562310 other upstream 1572257 15469674 ~ 15505517 (-)

Expression


Co-expression Network