AMCG00008888 (LOC107384035,LOC106518043,LOC108235781,LOC101174339,LOC108276103,LOC105937045,LOC103465370)


Basic Information

Item Value
gene id AMCG00008888
gene name LOC107384035,LOC106518043,LOC108235781,LOC101174339,LOC108276103,LOC105937045,LOC103465370
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 13985171 ~ 14006013 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008888
CCTCTTCTTACTTAACCTCAGCACGTGCCCCAGTGCCCCTGCCAGTGCGAGCTGAGCTCAGCCCTATTAATAAAGCTCCAGCGCCCTGTGGCCCAGCTCTGCCATGAGGACTGGGCAGGCTGAGCGGCCCCTGCTGCTGGAGCTCTGGCTGTGCGCTGGCCTGGCTGCCACCGTTTGCTGCGGCCTGCTGTGGCTGTGGAGGATGTGGAGGAGCAGCAGCCCCCTGCCGACCACCCTCTGCGCCCCCCTAGGCTCCCCTGCAGATTTGTTTGCGGCCTGCGACATGTCGAAGCAGAAAGCAGTGGACCTCACCAAGCTTGGGGTGGGCCGTGCCATCGCCGTGCTCACCTCTGGGGGGGATGCACAAGGGATGAATGCTGCAGTGCGTGCGGCTGTCAGAGTTGGCATCTACAGCGGGGCCAAGGTCTTCTTCGTGCACGAGGGCTACCAGGGCCTGGTGGATGGAGGGGACAATATCCGTCCTGCCACCTGGGAGAGCGTGTCCATGATGCTGCAGCTGGGAGGCACAGTGATTGGCAGTGCCCGCTGTCAGGATTTCCGGGAGCGGGAGGGGCGCACCAAGGCAGCTTATAACCTGGTGAAGCTGGGCATCACCAACCTGTGTGTAATCGGGGGTGATGGCAGCCTGACTGGCGCAAACCAGTTCCGCACGGAGTGGAGCGACCTGCTGGCTGACCTGGTCAAGGCGGgGAAGATCTCTGCAGAGGAGGCTCACCGCTCCTCTTACCTGAACATCGTGGGGATGGTGGGCTCCATCGACAATGACTTCTGTGGTACGGACATGACCATCGGCACGGACTCGGCCCTGCACCGCATCATGGAGGTGGTAGATGCCATCACCACCACTGCACAGAGCCATCAGAGGACCTTTGTGCTGGAGGTGATGGGCCGACATTGcgggtACCTGGCCTTGGTCACTGCGCTGTCCTGTGGGGCTGACTGGGTCTTCATCCCCGAGATGCCCCCTGAGGAGGATTGGGAGAACCACCTGTGTCGCAGGTTGGCTGAGactcgTACCCGAGGCTCCAGGCTGAATGTGATCATTGTGGCTGAGGGGGCCATCGACCGTTCAGGCAAACCCATCACCTCTGAACAGATCAAGAGAttggTGGTGAAGAGACTGGGCTATGACACTCGAGTCACCATCCTGGGCCACGTACAGAGAGGAGGCACCCCCTCCGCCTTCGACCGCATCCTGgGCAGCAGGATGGGTGTGGAAGCAGTGATGGCTCTGCTGGAGGCCACGCCGGACACACCCGCCTCTGTGGTCAGCCTGTCGGGCAACCAGGCTGTGCGCCTGCCACTCATGGAATGTGTGCAAGTGaCTAAAGATGTCACTCGGGCGATGGCAGAGGGGCGCTTTGAAGATGCCATCAAACTACgtgggagGAGCTTTGAGAACAACTGGAACACATACAAGATGCTGGCTCATGTGCACCCCCCAGAGAGCAAGcagTTCAATGCAGAGacTGCCTTTAACATTGGGATCGTGAACGTGGGTGCCCCCTGTTCGGGCATGAATGCGGCAGTGCGCTCCACCGTGAGGATCGGTCTGGTGCAGGGTCATAACATGTTTGCTGTGTACGACGGCTTTGAGGGGCTCGCCACAGGAAAGATTGAGCCAATCAAGTGGACAGACGTGGGCGGCTGGACGGGGAAGGGAGGCTCCATGTTGGGAACCAAGAGagTGTTGCCAGGCTCAATGATGGAGGACATCAGTGTGGGCATCAGCAAGTTCAACATCCATGCGCTGGTCATCATTGGGGGCTTTgaggcatACACCGGTGCTCTGGAGATGGTGGCAGCACGGGAGCGCTATGAGGAGCTGTGCATCCCGCTGGTGGTCATCCCGGCCACTGTGTCCAACAACATCCCTGGCTCTGACTTCAGCATCGGGGCCGACACTGCGCTCAACACCATCACCACGACGTGTGACCGTATCAAACAGTCGGCGGCGGGCACCAAGCGACGCGTCTTCATTGTGGAGACGATGGGGGGGTACTGTGGGTACCTGGCCACCATGGCGGGGCTGGCATCCGGGGCAGATGCCGCCTACATCTACGAGGACCACTTCACCATCCACGACCTTGAGGTGAACGTTCAGCATCTGGTGGAAAAGATGAAGACCACGGTGAAGAGAGGCCTGATCCTCAGGAATGAGAAGTGCAACTCAAACTACACCACTGACTTCATCTTCAGCCTGTACTCAGAGGAGGGCCGCGGCATATTCGACTGTAGGAAGAACGTGCTGGGGCACATGCAGCAGGGTGGCACCCCCACACCTTTCGACAGGAACTTTGGCACCAAGATGGGAGCCAAATCTGTGCTGTGGCTGACTGACAAGCTCAGGGAGTGCTACAGACAtgGCCGTGTGTTTGCTAACACCCCAGACTCAGCCTGTGTTCTGGGCATGAGGAAGAGAGCCCTTCTGTTCCAGCCCCTGGCCGACCTCAAAGCGCAGACTGACTTTGAgCACAGGATCCCTAAGGACCAGTGGTGGCTGAAACTGCGGCCTATCCTAAAGATCCTGGCCAAGTACCAGATCAGCCTGGACACTACAGAGAGAGCCAGCCTTGAGCACATCatccaccagaggggcaagAGCCACTGAGCCCTGCCCCaggaaggggagaggagaggagatgaGAGTAGAAGAGAGAAGACAGAAGAGAGAAGATGAGAGGAtgagctgtctgtctgtttaatgAAAGAGAAGGTGTctctatttaaacacattaaaagtgTCTAATAAGCAA

Function

NR:

description
PREDICTED: ATP-dependent 6-phosphofructokinase, muscle type-like

GO:

id name namespace
GO:0046835 carbohydrate phosphorylation biological_process
GO:0006096 glycolytic process biological_process
GO:0006002 fructose 6-phosphate metabolic process biological_process
GO:0005945 6-phosphofructokinase complex cellular_component
GO:0003872 6-phosphofructokinase activity molecular_function
GO:0005524 ATP binding molecular_function

KEGG:

id description
K00850 pfkA, PFK; 6-phosphofructokinase 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008888 True 2777 mRNA 0.59 24 13985171 14006013

Neighbor

gene id symbol gene type direction distance location
AMCG00008883 NA coding upstream 1541 13957368 ~ 13983630 (+)
AMCG00008884 NA coding upstream 36181 13942823 ~ 13948990 (+)
AMCG00008886 LOC107737655 coding upstream 63544 13906302 ~ 13921627 (+)
AMCG00008885 NA coding upstream 80416 13899291 ~ 13904755 (+)
AMCG00008880 cacnb3a,LOC107724200,LOC107696997 coding upstream 162115 13815425 ~ 13823056 (+)
AMCG00008889 NA coding downstream 1585 14007598 ~ 14013737 (+)
AMCG00008893 LOC107695795,LOC106567037 coding downstream 83640 14089653 ~ 14092404 (+)
AMCG00008892 LOC103385083,LOC103368464,LOC101482250,LOC101064460 coding downstream 97338 14103351 ~ 14109000 (+)
AMCG00008898 NA coding downstream 107448 14113461 ~ 14141914 (+)
AMCG00008900 NA coding downstream 137193 14143206 ~ 14144894 (+)
G52100 NA non-coding upstream 297391 13686839 ~ 13687780 (+)
G52044 NA non-coding upstream 508193 13476750 ~ 13476978 (+)
G51970 NA non-coding upstream 670119 13313590 ~ 13315052 (+)
G51969 NA non-coding upstream 672713 13311329 ~ 13312458 (+)
G51968 NA non-coding upstream 674398 13309616 ~ 13310773 (+)
G52234 NA non-coding downstream 122474 14128487 ~ 14128691 (+)
G52361 NA non-coding downstream 536626 14542639 ~ 14545754 (+)
G52364 NA non-coding downstream 546883 14552896 ~ 14553241 (+)
G52372 NA non-coding downstream 554706 14560719 ~ 14561249 (+)
G52374 NA non-coding downstream 556432 14562445 ~ 14562710 (+)
AMCG00008856 rps26,RPS26,LOC106567051 other upstream 675741 13306495 ~ 13309430 (+)
G51939 NA other upstream 727531 13253814 ~ 13257640 (+)
G51928 LOC108272117,LOC107678215,LOC107581315,LOC107713111,LOC107551923 other upstream 760225 13222320 ~ 13224946 (+)
AMCG00008837 march9,LOC107664138,LOC107593952,LOC107714987,LOC106583285 other upstream 992446 12980804 ~ 12992725 (+)
G51812 NA other upstream 1058377 12925238 ~ 12926794 (+)
G52349 NA other downstream 475908 14481921 ~ 14483255 (+)
AMCG00008910 NA other downstream 521805 14527818 ~ 14542248 (+)
AMCG00008917 smarcc2 other downstream 732436 14738449 ~ 14754644 (+)
AMCG00008920 NA other downstream 777030 14783043 ~ 14795184 (+)
AMCG00008919 zbtb45,LOC104952775,LOC105021497,LOC101077905,LOC102207372,LOC101487628,LOC102796714,LOC100704009 other downstream 801284 14807297 ~ 14811757 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location