AMCG00008889


Basic Information

Item Value
gene id AMCG00008889
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 14007598 ~ 14013737 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008889
ATGAAGGTGATCCTGTTCCTCGCGCTCAGCCTCTCTCCCCTGGCTCAGGGGCGGAGCAgggGATCAGGCTCCACTCTGCCCATCTCTGACAGTGAGCTGCTGTCTGTGTCTGAGCTGCTTTTCTCAGTGGATGAGAACAAGGCATCCCCCTCCCAGCTGACCATCTCCCCCCAGACCCTCATCCCAAACTCCGAGACCGCCACCCAGCAGGATCTGTCCCCCAGGCCgtTGTTCAGCTATGTTGACAAGGCCCTGTTCTCTCGCCCCACCTTCTCCTCCTTTGCTGCTTTGCTGGACAATTATCATCGGAAAACAGGCGTGTCTGAGGCCTTCAGTCCCGTCCAGCTGCAAGAGCAGGTCACCTTCCTGCAGGCGGCCATCAGCCACACAGCCGTGGGACAAAAGCTGTACAACTTCCTAAACAGCAAAAGGTACCCTGATGTCCTGGGGATGCAGTTTAACTGGGATGGTTTCTTCAAGCAGCCCGGATAA

Function

GO:

id name namespace
GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic biological_process
GO:0004521 endoribonuclease activity molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008889 True 492 mRNA 0.57 5 14007598 14013737

Neighbor

gene id symbol gene type direction distance location
AMCG00008888 LOC107384035,LOC106518043,LOC108235781,LOC101174339,LOC108276103,LOC105937045,LOC103465370 coding upstream 1585 13985171 ~ 14006013 (+)
AMCG00008883 NA coding upstream 23968 13957368 ~ 13983630 (+)
AMCG00008884 NA coding upstream 58608 13942823 ~ 13948990 (+)
AMCG00008886 LOC107737655 coding upstream 85971 13906302 ~ 13921627 (+)
AMCG00008885 NA coding upstream 102843 13899291 ~ 13904755 (+)
AMCG00008893 LOC107695795,LOC106567037 coding downstream 75916 14089653 ~ 14092404 (+)
AMCG00008892 LOC103385083,LOC103368464,LOC101482250,LOC101064460 coding downstream 89614 14103351 ~ 14109000 (+)
AMCG00008898 NA coding downstream 99724 14113461 ~ 14141914 (+)
AMCG00008900 NA coding downstream 129469 14143206 ~ 14144894 (+)
AMCG00008899 NA coding downstream 142083 14155820 ~ 14163655 (+)
G52100 NA non-coding upstream 319818 13686839 ~ 13687780 (+)
G52044 NA non-coding upstream 530620 13476750 ~ 13476978 (+)
G51970 NA non-coding upstream 692546 13313590 ~ 13315052 (+)
G51969 NA non-coding upstream 695140 13311329 ~ 13312458 (+)
G51968 NA non-coding upstream 696825 13309616 ~ 13310773 (+)
G52234 NA non-coding downstream 114750 14128487 ~ 14128691 (+)
G52361 NA non-coding downstream 528902 14542639 ~ 14545754 (+)
G52364 NA non-coding downstream 539159 14552896 ~ 14553241 (+)
G52372 NA non-coding downstream 546982 14560719 ~ 14561249 (+)
G52374 NA non-coding downstream 548708 14562445 ~ 14562710 (+)
AMCG00008856 rps26,RPS26,LOC106567051 other upstream 698168 13306495 ~ 13309430 (+)
G51939 NA other upstream 749958 13253814 ~ 13257640 (+)
G51928 LOC108272117,LOC107678215,LOC107581315,LOC107713111,LOC107551923 other upstream 782652 13222320 ~ 13224946 (+)
AMCG00008837 march9,LOC107664138,LOC107593952,LOC107714987,LOC106583285 other upstream 1014873 12980804 ~ 12992725 (+)
G51812 NA other upstream 1080804 12925238 ~ 12926794 (+)
G52349 NA other downstream 468184 14481921 ~ 14483255 (+)
AMCG00008910 NA other downstream 514081 14527818 ~ 14542248 (+)
AMCG00008917 smarcc2 other downstream 724712 14738449 ~ 14754644 (+)
AMCG00008920 NA other downstream 769306 14783043 ~ 14795184 (+)
AMCG00008919 zbtb45,LOC104952775,LOC105021497,LOC101077905,LOC102207372,LOC101487628,LOC102796714,LOC100704009 other downstream 793560 14807297 ~ 14811757 (+)

Expression


Co-expression Network