AMCG00008891 (neurod4,LOC105013535,LOC106567036)


Basic Information

Item Value
gene id AMCG00008891
gene name neurod4,LOC105013535,LOC106567036
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 14017350 ~ 14021503 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008891
ATGAACACCAGAGGCGAGGTGGCGGAGCTGGTGAGCTCTCTGGGCTGGATGGAGGATGACTGCAGCTCACAGGATGGGGAGGAGGCGCCACAGCTGGGTCGCTATATCCTGGGGGTGCGTGGTGGCGGTGAGATGGGTAGTGAGGAcatggaggaagaggaagaggatgaCGAAGAACTGGATGAGGAGGAACTAGAGGAAGGGGAGGCGGGGGATGAGGACAAGGCACCCAAGCGGAGGGGGcctaagaagaagaagatgacgAAGGCGCGGCTGGAGCGGTTCCGGGCACGGCGGGTGAAGGCCAACGCCCGGGAGCGCTCGCGCATGCACGGCCTGAATGATGCACTGGACAGCCTGCGTCGCGTCATGCCCTGCTACTCCAAGACCCAAAAACTGTCCAAGATTGAGACCCTGCGGCTGGCACGCAACTACATCTGGGCGCTGTCCGAGGTTCTGGAGAGCGGCCAGGCGCCCGAGAGTCCCGGCTTCGTGGACATGCTGTGCAAGGGCCTGTCACAGCCCACCAGCAACTTAGTGGCCGGGTGCATGCAGCTGGGTCCGGGGGGGACTATGAGTCTGGACAAGATGGaagacaaacagcagcagcacatgtGTGGTGTGggtgggggaggtggaggggggatGATGGGCGTTGGAGTGGGCGTGGGAGTTAGTGTGGGCATGCCTGGTGGCCACCCCTTCAGCTACCCCTCCCCAGGCCTGCCCTCACCACCCTATGGCTCGCTGGAGGCCTCCCACCTCTTGCACCTCAAGCCCCTGCAGGGGTACAAGCCCCCCCCATATGAGAACCCCTCCCCAGGCCAGGAACTGGACCAAGGTGGGGGGGACTCCATCTGTCAGGCAGGCTGTCCTAGGAGAGCCAGCTATTCCCCCAGggagacagcagagagagaggcgcTGAACAGAGCACACCCAGTCCCTCATCAGCAGCTATAA

Function

symbol description
neurod4 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within nervous system development; neural plate morphogenesis; and olfactory placode development. Predicted to be active in nucleus. Is expressed in several structures, including head; nervous system; neural plate; neural tube; and trigeminal neural crest. Orthologous to human NEUROD4 (neuronal differentiation 4).

NR:

description
PREDICTED: neurogenic differentiation factor 4

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0001839 neural plate morphogenesis biological_process
GO:0071698 olfactory placode development biological_process
GO:0050769 positive regulation of neurogenesis biological_process
GO:0005488 binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008891 True 960 mRNA 0.63 3 14017350 14021503

Neighbor

gene id symbol gene type direction distance location
AMCG00008887 LOC103368342,LOC104967533,LOC101064836 coding downstream 119933 13891280 ~ 13897417 (-)
AMCG00008881 LOC103358261,LOC101472065,LOC103037018,LOC100705424,LOC104932892 coding downstream 135859 13866654 ~ 13881491 (-)
AMCG00008882 ddx23 coding downstream 177424 13831207 ~ 13839926 (-)
AMCG00008879 NA coding downstream 245960 13737882 ~ 13771390 (-)
AMCG00008878 NA coding downstream 283312 13720710 ~ 13734038 (-)
AMCG00008890 NA coding upstream 20270 14041773 ~ 14042907 (-)
AMCG00008904 NA coding upstream 363066 14384569 ~ 14389388 (-)
AMCG00008907 NA coding upstream 368686 14390189 ~ 14393018 (-)
AMCG00008911 NA coding upstream 470667 14492170 ~ 14495264 (-)
AMCG00008915 LOC106583168 coding upstream 548949 14570452 ~ 14587950 (-)
G52214 NA non-coding downstream 10911 14005727 ~ 14006439 (-)
G52157 NA non-coding downstream 187035 13823113 ~ 13830315 (-)
G52131 NA non-coding downstream 240421 13771560 ~ 13776929 (-)
G52019 NA non-coding downstream 561498 13373383 ~ 13455852 (-)
G52041 NA non-coding downstream 577724 13438088 ~ 13439626 (-)
G52233 LOC101154678 non-coding upstream 105736 14127239 ~ 14127501 (-)
G52296 NA non-coding upstream 250471 14271974 ~ 14275087 (-)
G52314 LOC105897838 non-coding upstream 339430 14360933 ~ 14365179 (-)
G52308 NA non-coding upstream 352088 14373591 ~ 14378330 (-)
G52355 NA non-coding upstream 492374 14513877 ~ 14514078 (-)
G52187 ptges3a,ptges3,LOC107745455,LOC107570321,LOC108433158 other downstream 33457 13938451 ~ 13983893 (-)
G52099 NA other downstream 330613 13685335 ~ 13686737 (-)
AMCG00008860 NA other downstream 692123 13316867 ~ 13325227 (-)
G51974 rps26 other downstream 707925 13307422 ~ 13309425 (-)
AMCG00008853 ARF3,arf3,arf3a,LOC106921537,LOC102781726,LOC106954774,LOC104956878 other downstream 755528 13257698 ~ 13261822 (-)
AMCG00008918 c1ql4b,LOC107673443,LOC107711019,LOC108440793,LOC107585204,LOC108271740,LOC107667333,LOC108432462,LOC100702077,LOC103376602 other upstream 672327 14693830 ~ 14715322 (-)
AMCG00008923 NA other upstream 819204 14840707 ~ 14865988 (-)
AMCG00008934 NA other upstream 1010844 15032347 ~ 15057206 (-)
AMCG00008951 ap2a2,LOC106587467,LOC106562310 other upstream 1448171 15469674 ~ 15505517 (-)
AMCG00008957 NA other upstream 1582322 15603825 ~ 15639130 (-)

Expression


Co-expression Network