AMCG00008892 (LOC103385083,LOC103368464,LOC101482250,LOC101064460)


Basic Information

Item Value
gene id AMCG00008892
gene name LOC103385083,LOC103368464,LOC101482250,LOC101064460
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 14103351 ~ 14109000 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008892
CCCCCAGCCCCAACGCTCTGCCCGCTCCTCCCCAGtcctccagcagggggagcccTTACTCTTGCCCCACCCACCTCAGGAGTGTCCCCCGGCCGCCACTCCAACAGCCTTGTCCCCCGGCCTGAGGCCTCTGCACTGCCCAATGGGGCCCCCTCCATGGCGGCTCCTACTCCCCCACCCAGCGCCAGCCCACCAGAGTCTGAGGAGGACAAGGCCAAGAAACTGCTCTACTGTTCTCTGTGCAAGGTGGCTGTCAACTCGCTGTCACAGTTGGAGGCCCACAACAAGGGTACCAAACACAAAACGATCCTGGAGGCAAGGAGTGGTCTGGGCCCAATCAAGGCATACCCCCGGTTGGGGCCGCGGCCCAGCGCAGAGCAGGGGGGGGGTACCCAGGACCCCGACTCTCAGGAACGCACCTTTCACTGTGAGATCTGCAATcaCATATCCAGTAGGCGTCACCGGGATGGAGTTGCTGGGAAGCCGAATCCCCTCTTGACTCGGCACAAGAAGCACCGTGGCGCCGACCTCACGTCCTCTCTGTCCTTCCCGAAGGATCTGCCGAAAGCTCTGGGAGCCGGACTGTTGCCCAGCCCACTAGCTGTTGCTGCAGCGATGGCAGCTgctgcctcctcctccccacTGGCTCTGCGGGCGGCTGCCGGCGCTGCcccccaccaccatcaccaccaccacctgctGCAGGGCCCGCCCCTCAGCCACGCCCTGCTAAGACCTGCCCCCGGGCCCATCCGCACCTCACACGGGCCAATCCTCTTCTCCCCTTAC

Function

NR:

description
PREDICTED: zinc finger protein 385A-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008892 True 789 mRNA 0.65 4 14103351 14109000

Neighbor

gene id symbol gene type direction distance location
AMCG00008893 LOC107695795,LOC106567037 coding upstream 10947 14089653 ~ 14092404 (+)
AMCG00008889 NA coding upstream 89614 14007598 ~ 14013737 (+)
AMCG00008888 LOC107384035,LOC106518043,LOC108235781,LOC101174339,LOC108276103,LOC105937045,LOC103465370 coding upstream 97338 13985171 ~ 14006013 (+)
AMCG00008883 NA coding upstream 119721 13957368 ~ 13983630 (+)
AMCG00008884 NA coding upstream 154361 13942823 ~ 13948990 (+)
AMCG00008898 NA coding downstream 4461 14113461 ~ 14141914 (+)
AMCG00008900 NA coding downstream 34206 14143206 ~ 14144894 (+)
AMCG00008899 NA coding downstream 46820 14155820 ~ 14163655 (+)
AMCG00008896 NA coding downstream 118717 14227717 ~ 14245887 (+)
AMCG00008895 pfdn5,LOC102784983 coding downstream 141246 14250246 ~ 14253618 (+)
G52100 NA non-coding upstream 415571 13686839 ~ 13687780 (+)
G52044 NA non-coding upstream 626373 13476750 ~ 13476978 (+)
G51970 NA non-coding upstream 788299 13313590 ~ 13315052 (+)
G51969 NA non-coding upstream 790893 13311329 ~ 13312458 (+)
G51968 NA non-coding upstream 792578 13309616 ~ 13310773 (+)
G52234 NA non-coding downstream 19487 14128487 ~ 14128691 (+)
G52361 NA non-coding downstream 433639 14542639 ~ 14545754 (+)
G52364 NA non-coding downstream 443896 14552896 ~ 14553241 (+)
G52372 NA non-coding downstream 451719 14560719 ~ 14561249 (+)
G52374 NA non-coding downstream 453445 14562445 ~ 14562710 (+)
AMCG00008856 rps26,RPS26,LOC106567051 other upstream 793921 13306495 ~ 13309430 (+)
G51939 NA other upstream 845711 13253814 ~ 13257640 (+)
G51928 LOC108272117,LOC107678215,LOC107581315,LOC107713111,LOC107551923 other upstream 878405 13222320 ~ 13224946 (+)
AMCG00008837 march9,LOC107664138,LOC107593952,LOC107714987,LOC106583285 other upstream 1110626 12980804 ~ 12992725 (+)
G51812 NA other upstream 1176557 12925238 ~ 12926794 (+)
G52349 NA other downstream 372921 14481921 ~ 14483255 (+)
AMCG00008910 NA other downstream 418818 14527818 ~ 14542248 (+)
AMCG00008917 smarcc2 other downstream 629449 14738449 ~ 14754644 (+)
AMCG00008920 NA other downstream 674043 14783043 ~ 14795184 (+)
AMCG00008919 zbtb45,LOC104952775,LOC105021497,LOC101077905,LOC102207372,LOC101487628,LOC102796714,LOC100704009 other downstream 698297 14807297 ~ 14811757 (+)

Expression


Co-expression Network