AMCG00008893 (LOC107695795,LOC106567037)


Basic Information

Item Value
gene id AMCG00008893
gene name LOC107695795,LOC106567037
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 14089653 ~ 14092404 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008893
GTGGTTACTGACTAGCCTGTCTCTGCAGATGGACCCAGTCCAGAAGGCGGTGATCAACCACACCTTCGGAGTCCCGCTGGTCAAGACCAAGAGACCGGTCATCTCCTGCAACATCTGCCAGATCCGCTTCAACTCCGAGaGCCAGGCAGAGGCACACTACAAGGGGAACCGGCATGCCCGTCGCATCAAGGGCATCGAGACGTCCAAGACCCGCCCCTCCGAGCCTGACAACCCCACACCTGCGCCCACGGCCTCGCCCTCGCCCCCCGGCCCCCTCACGGCAGCTCCCCTCTCAGACAGCAAGCCCAGTCGC

Function

NR:

description
PREDICTED: zinc finger protein 385A-like isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008893 True 313 mRNA 0.64 2 14089653 14092404

Neighbor

gene id symbol gene type direction distance location
AMCG00008889 NA coding upstream 75916 14007598 ~ 14013737 (+)
AMCG00008888 LOC107384035,LOC106518043,LOC108235781,LOC101174339,LOC108276103,LOC105937045,LOC103465370 coding upstream 83640 13985171 ~ 14006013 (+)
AMCG00008883 NA coding upstream 106023 13957368 ~ 13983630 (+)
AMCG00008884 NA coding upstream 140663 13942823 ~ 13948990 (+)
AMCG00008886 LOC107737655 coding upstream 168026 13906302 ~ 13921627 (+)
AMCG00008892 LOC103385083,LOC103368464,LOC101482250,LOC101064460 coding downstream 10947 14103351 ~ 14109000 (+)
AMCG00008898 NA coding downstream 21057 14113461 ~ 14141914 (+)
AMCG00008900 NA coding downstream 50802 14143206 ~ 14144894 (+)
AMCG00008899 NA coding downstream 63416 14155820 ~ 14163655 (+)
AMCG00008896 NA coding downstream 135313 14227717 ~ 14245887 (+)
G52100 NA non-coding upstream 401873 13686839 ~ 13687780 (+)
G52044 NA non-coding upstream 612675 13476750 ~ 13476978 (+)
G51970 NA non-coding upstream 774601 13313590 ~ 13315052 (+)
G51969 NA non-coding upstream 777195 13311329 ~ 13312458 (+)
G51968 NA non-coding upstream 778880 13309616 ~ 13310773 (+)
G52234 NA non-coding downstream 36083 14128487 ~ 14128691 (+)
G52361 NA non-coding downstream 450235 14542639 ~ 14545754 (+)
G52364 NA non-coding downstream 460492 14552896 ~ 14553241 (+)
G52372 NA non-coding downstream 468315 14560719 ~ 14561249 (+)
G52374 NA non-coding downstream 470041 14562445 ~ 14562710 (+)
AMCG00008856 rps26,RPS26,LOC106567051 other upstream 780223 13306495 ~ 13309430 (+)
G51939 NA other upstream 832013 13253814 ~ 13257640 (+)
G51928 LOC108272117,LOC107678215,LOC107581315,LOC107713111,LOC107551923 other upstream 864707 13222320 ~ 13224946 (+)
AMCG00008837 march9,LOC107664138,LOC107593952,LOC107714987,LOC106583285 other upstream 1096928 12980804 ~ 12992725 (+)
G51812 NA other upstream 1162859 12925238 ~ 12926794 (+)
G52349 NA other downstream 389517 14481921 ~ 14483255 (+)
AMCG00008910 NA other downstream 435414 14527818 ~ 14542248 (+)
AMCG00008917 smarcc2 other downstream 646045 14738449 ~ 14754644 (+)
AMCG00008920 NA other downstream 690639 14783043 ~ 14795184 (+)
AMCG00008919 zbtb45,LOC104952775,LOC105021497,LOC101077905,LOC102207372,LOC101487628,LOC102796714,LOC100704009 other downstream 714893 14807297 ~ 14811757 (+)

Expression


Co-expression Network