AMCG00008894 (asb8,LOC107745463,LOC107563629,LOC107681993)


Basic Information

Item Value
gene id AMCG00008894
gene name asb8,LOC107745463,LOC107563629,LOC107681993
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 14279340 ~ 14281471 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008894
ATGAGCTCCACTATGTGGTACATCATGCAGAGCATCCAGAGCAAGTACTCCCTGTCCGAGCGGCTGATCCGCACCATCGCCGCCATCCGCTCCTTCCCCCATGACAGTGTGGAGGACCTCATCCGCAGGGGAGCTGATATCAATGGTATGCATGGTACTCTGAAGCCACTGCACTGTGCCTGTATGGTGGCTGATGCCGACTGTGTGGAGTTGCTGCTGGAGAAGGGAGCTGAGgtgAACTCCCTGGATGGCTACAACCGCACCGCGCTGCACTATGCAGCGGAGAAGGACGACAGCTGTGTGGAGGTGCTGCTGGAGTATGGTGCCGACCCCGACGCACTGGATGGCAACAAGGACACACCGCTGCACTGGGCTGCCTTCAAGGACAACGCCGACTGCGTGCGTGCGCTGCTGGAGAGCGGGGCACAGGCCAATGCGCGTGACTACAATGAGGACACGCCGCTGAGCTGGGCCGCCATGAAGGGCAACCTGGAGAGTGTGCGCACGCTGCTGGACTATGGCGCCCGCGTGCACGTCACCAACCTGCGTGGCCAGACTCCCATCTCGCGGCTCGCGGCCTTGTTGGCACGGGGGCTGGGCACTGACCAGGAGGAGGCCTGCCTGGAGCTGCTGCACCGGGCGGCCGGGAGTTTTGAGCTGCGGCGGGATGGCTGTTTTCCTCGAGAAGTGACCCGCGACCCCCAGCTGTGCGCCCGGCTGGCCGAGATGTGTGCCCGGCCCCCTAACCTGGCCGCCCTCGCCCGCTGCACCGTGCGGGCCAGCCTGGGGGAGCGCCACCTGCCCTCCGCCGTCACTCAGCTGCCCCTGCCCTCTGCCCTGCAGGAGTATGTGCTACTGAGGGACTGA

Function

symbol description
asb8 Predicted to be involved in protein ubiquitination. Predicted to act upstream of or within intracellular signal transduction. Is expressed in gut; liver; and yolk syncytial layer. Orthologous to human ASB8 (ankyrin repeat and SOCS box containing 8).

NR:

description
ankyrin repeat and SOCS box protein 8

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0016567 protein ubiquitination biological_process

KEGG:

id description
K10330 ASB8; ankyrin repeat and SOCS box protein 8

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008894 True 867 mRNA 0.65 3 14279340 14281471

Neighbor

gene id symbol gene type direction distance location
AMCG00008897 NA coding upstream 7677 14254299 ~ 14271663 (+)
AMCG00008895 pfdn5,LOC102784983 coding upstream 25722 14250246 ~ 14253618 (+)
AMCG00008896 NA coding upstream 33453 14227717 ~ 14245887 (+)
AMCG00008899 NA coding upstream 115685 14155820 ~ 14163655 (+)
AMCG00008900 NA coding upstream 134446 14143206 ~ 14144894 (+)
AMCG00008901 NA coding downstream 11938 14293409 ~ 14308544 (+)
AMCG00008903 dip2b coding downstream 47860 14329331 ~ 14361438 (+)
AMCG00008902 NA coding downstream 85490 14366961 ~ 14378115 (+)
AMCG00008908 LOC108433193 coding downstream 132878 14414349 ~ 14414735 (+)
AMCG00008906 LOC108433193,LOC104932970 coding downstream 138347 14419818 ~ 14455800 (+)
G52234 NA non-coding upstream 150649 14128487 ~ 14128691 (+)
G52100 NA non-coding upstream 591560 13686839 ~ 13687780 (+)
G52044 NA non-coding upstream 802362 13476750 ~ 13476978 (+)
G51970 NA non-coding upstream 964288 13313590 ~ 13315052 (+)
G51969 NA non-coding upstream 966882 13311329 ~ 13312458 (+)
G52361 NA non-coding downstream 261168 14542639 ~ 14545754 (+)
G52364 NA non-coding downstream 271425 14552896 ~ 14553241 (+)
G52372 NA non-coding downstream 279248 14560719 ~ 14561249 (+)
G52374 NA non-coding downstream 280974 14562445 ~ 14562710 (+)
G52377 LOC108235766,LOC107384431,LOC106518056 non-coding downstream 294965 14576436 ~ 14576682 (+)
AMCG00008856 rps26,RPS26,LOC106567051 other upstream 969910 13306495 ~ 13309430 (+)
G51939 NA other upstream 1021700 13253814 ~ 13257640 (+)
G51928 LOC108272117,LOC107678215,LOC107581315,LOC107713111,LOC107551923 other upstream 1054394 13222320 ~ 13224946 (+)
AMCG00008837 march9,LOC107664138,LOC107593952,LOC107714987,LOC106583285 other upstream 1286615 12980804 ~ 12992725 (+)
G51812 NA other upstream 1352546 12925238 ~ 12926794 (+)
G52349 NA other downstream 200450 14481921 ~ 14483255 (+)
AMCG00008910 NA other downstream 246347 14527818 ~ 14542248 (+)
AMCG00008917 smarcc2 other downstream 456978 14738449 ~ 14754644 (+)
AMCG00008920 NA other downstream 501572 14783043 ~ 14795184 (+)
AMCG00008919 zbtb45,LOC104952775,LOC105021497,LOC101077905,LOC102207372,LOC101487628,LOC102796714,LOC100704009 other downstream 525826 14807297 ~ 14811757 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000001_10429436_10432248 ASB8 coding CI01000001 null 10428945 ~ 10433559 (-)