AMCG00008897


Basic Information

Item Value
gene id AMCG00008897
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 14254299 ~ 14271663 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008897
caGACAGTGGCGCTGAGCTGCGCTCTGGTGAGCTGCGTGTACCCCAGCGTCCGCTTCGGTCGTCCGGCTAGGAATGTGCTGTGCACCTCCCTGATCGGCAGAAGTACGGCTTTATCCACAGCGCAGGAGAGCACCATTTATAGGTCTCGGTCGCGTCTATCGAGTTgtaagttattataattataataattggtTTGGGATTGTTACGGTTTAATTTTCCTCATTGATCATTTCCTGGGGGTGAGGGGGTAAAGTACAGCAGACTGCTCAACCAAAGACACGGGTCTTGTTGCATTTCTGTCACCCGGCGAGGAGAGGATCGGGCTAGCAGGGGGGAGGGCGAGGGggcgagcgagcgagcgaggcGGGGAGGCAGAGCGCCAGGGCCGGCTCATGAGTTCGGAGCAGGGCGGAGAGCCGCAGCTGCAGCAGGAGACCCGCCGACGGGACGGAGACCGGAGATCCGAGGCCGGCGGAGACGGAGACGGAGGCGGCATGGTGACCTCGAAAGGTGCAGGCCTGAACCCCAACGCGAAGGTGTGGCAGGAGATCCCAACGGGGGGCGGTGAGGGGTCAGCCACCCCCAATGACAGCGAAGGCTCTCCATGGCCACAGGAAGCCCCCTCCCACATCCCTGAGGgttACCCAGAGGCGCCCCCTGATGGCTGTAAGCAGTATAGCATGATGTTCTCCAGCATGCCGGATAGCAGCAGCCCCAGCGatcccccggagcagactgtcAATGGCATGGACCCCTCTGAGCTCCCCTTCCCACTTTACGAGGGACCATCGGGCAGTGCTGGAGAGGGCGATCTGTCAGAGGAGCAGCCTGTCCCTGCGGAGAACCTGCGCGAGTCCCTGAAGAAACAGCTGGAGTTCTGCTTCTCCAgagAGAACCTGTCGAAGGACCTGTACTTGATGTCACAGATGGACAGTGACCAGTTTGTGCCCATCTGGACCATCGCCAGCATGGAGGGCATCAAGATCCTGACCACTGACCTGCAGCTCATACTGGATGTCCTGAGGTCGTCCCCAATGGTGCAGGTGGATGAGAAGGGAGAGAAGGTGCGGCCCAACCACAAGCGCTGCATCATCATCCTGAGAGAGGTGCCCGAGACCACCCCTGTGGAGgaggtGGAGGCTCTGTTCAGGCATGACAACTGTCCCAAGGTCATCAGTGTGGAGTTCGCCCATAACAACAACTGGTACATCACATTCCAGTCTGACACTGATGCACAGCAGGCCTACAGGTATTTAAGGGAAGACGTGAAAACATTTCAGGGGAGACCGATCATGGCAAGGATAAAGGCCATCAACACATTCTTTGCGAAGAACGGGTACCGCAGCCTGGACTCCAGCGTGTTTTCACAGCAGAGCCAGAGCCCGTCCCAGTACAGCTCCCCACTCTACATGCAGCACGTGTACAGCCCACAGCAGCAGTTCCCACTTTACGGCATTGTGCCCCCCACCTGGTCCCCCTCTCCGACGCCGTACTTCGAAACCCCCCTGGCTCCTTTCCCCAACAGTGGCTTTGTGAATGGCTTCAGCTCCCCAGGGAGCTACAAGGGCAGCTCCAGTTCCCTGAACCTGGGTCGGCCCTTCAACAGGAACCGGAACCACGTGAAGCCTCATCCCCGGTCAGGCGAAGGTGCCCCCCCGTCTGTGCCCCCCCTGCCGCTTGTGGAGGGCCTGTCAGGGCAGCgcagcccccagcccccccgCACCGGCCCTGCCCTCACCCCTACTGACCTCAGTCCCAGCTTTGGCCTGAAGGACACCAACCTTCCGCCCACTGAGCTCAACGGAGACATCGGCATGGCCGGTCGTGGCAGgagGGGTGCCTACAGAGCGACGCGGCGGAGGAGAGAGGACGAGCGCAGCATGAGGCCACCCCCACTGACAGAGATCAAGGTGCAGCCCCCCAATTTTGAACTGGTCCCCTCCAACTTCCCCCCGCTGCCGGGCTCCCAGGTCAGCGCCCAAGGGGAGCCCACCCAGGAGCCACGGCTGGCTGATGTGGTCCGGGGCCTGGGCCGGGAGCGAGCCTGCGCACCACCCACCTCTGGCCCACGCAGTGTTGCGGCACCGCTGCCCCACGCCCAGGAGAGCAGACCCAACCAAAGCCTGCACGAGCCCGGTAATGAACCCCCGGGTAGCTCCAGCTGTGTCCAGGAGGAGGCAGTGTCCAGCGCCAGCTCCACCCAGCCCGCAGTCAAATCGTCTAACTCCGCCCCCACACCCTGCGAGCCCCTGGCCTCCAGtGCCACTCAGCAGGAGAAGAAGCAGGAGAAGCCCGAAACCCCCAAAGACACACCAGTCTCCTCTGCCCCGCCTACAACGATGGTTCAGCCCTCCATGACCACCAAGCCCTCCCGAGCCACAGCCACCAACACCACCACTGCCACCGCTCCCCTTCTTTCAACCACCTTGACCCCTGCCCTGGAGCCCCGGAAGCTGAGCTATGCAGAAGTATGTCAACGGCCCCCGAAGGACCCCCCCCCGCCAGCCCCTACACAGCCCCTGAGAGAGCTGAGAGTGAACAAGGCTGACGATCCCACCGCTGCTGCCCCCACCCCTGCCCCCACTGCTGATAAGCAGAGCCCCCCACCAGAGAAATCTGCTGAAGGCAAGACATCGGAGGGACGCCCCCAACGGGACTCCCTGGGCCCCTACCGCAGCAATGGACCCCCCAGGACGGGTGGCACCGGGCTAAAACTGCGAGAACAGCAGCGGCGCCCCCCACTCACTCGCCGGCACTCCCCTCAGGGGGTGCCCCGGCGCAGCGGCAAAGAACAGAACATTCCACCGCGCTCGCCAAAGTAAAACGCACGGCAATGAGAGACATGAACAaactaaatatgtttaaaaaaataaaattacaaaaaactttcaaaaaaaattaaaattaaaacagaatggGGGGGAAATATCTATAGATAAATATATCTTCACCGCGGACTGGTGGCAGCACGAGACGGTGCTGTCAGACCTCTGAGGAACACACTGCAAGTGGGACACAGGTGGAGAGGAATTGAAATCAATGAATGAAACGGCTAATAAGAAATGGACAGAGCACAGGTAGGGGACTCGCCCGCCCAGCTCTGAGCTGTGCCGCAGGAGCACATTTAATTGGTCTCTGCACCATTCTTCACTGGCCCTGGAGAGGAATTGGAACAGTAGTtgagatttttcttctatttaattttttttgtgtaattttagGTTTGGTTTGGTGGTGCTGGGCTGCGg

Function

GO: NA

KEGG:

id description
K18763 LARP4; la-related protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008897 True 3249 mRNA 0.60 16 14254299 14271663

Neighbor

gene id symbol gene type direction distance location
AMCG00008895 pfdn5,LOC102784983 coding upstream 681 14250246 ~ 14253618 (+)
AMCG00008896 NA coding upstream 8412 14227717 ~ 14245887 (+)
AMCG00008899 NA coding upstream 90644 14155820 ~ 14163655 (+)
AMCG00008900 NA coding upstream 109405 14143206 ~ 14144894 (+)
AMCG00008898 NA coding upstream 112385 14113461 ~ 14141914 (+)
AMCG00008894 asb8,LOC107745463,LOC107563629,LOC107681993 coding downstream 7677 14279340 ~ 14281471 (+)
AMCG00008901 NA coding downstream 21746 14293409 ~ 14308544 (+)
AMCG00008903 dip2b coding downstream 57668 14329331 ~ 14361438 (+)
AMCG00008902 NA coding downstream 95298 14366961 ~ 14378115 (+)
AMCG00008908 LOC108433193 coding downstream 142686 14414349 ~ 14414735 (+)
G52234 NA non-coding upstream 125608 14128487 ~ 14128691 (+)
G52100 NA non-coding upstream 566519 13686839 ~ 13687780 (+)
G52044 NA non-coding upstream 777321 13476750 ~ 13476978 (+)
G51970 NA non-coding upstream 939247 13313590 ~ 13315052 (+)
G51969 NA non-coding upstream 941841 13311329 ~ 13312458 (+)
G52361 NA non-coding downstream 270976 14542639 ~ 14545754 (+)
G52364 NA non-coding downstream 281233 14552896 ~ 14553241 (+)
G52372 NA non-coding downstream 289056 14560719 ~ 14561249 (+)
G52374 NA non-coding downstream 290782 14562445 ~ 14562710 (+)
G52377 LOC108235766,LOC107384431,LOC106518056 non-coding downstream 304773 14576436 ~ 14576682 (+)
AMCG00008856 rps26,RPS26,LOC106567051 other upstream 944869 13306495 ~ 13309430 (+)
G51939 NA other upstream 996659 13253814 ~ 13257640 (+)
G51928 LOC108272117,LOC107678215,LOC107581315,LOC107713111,LOC107551923 other upstream 1029353 13222320 ~ 13224946 (+)
AMCG00008837 march9,LOC107664138,LOC107593952,LOC107714987,LOC106583285 other upstream 1261574 12980804 ~ 12992725 (+)
G51812 NA other upstream 1327505 12925238 ~ 12926794 (+)
G52349 NA other downstream 210258 14481921 ~ 14483255 (+)
AMCG00008910 NA other downstream 256155 14527818 ~ 14542248 (+)
AMCG00008917 smarcc2 other downstream 466786 14738449 ~ 14754644 (+)
AMCG00008920 NA other downstream 511380 14783043 ~ 14795184 (+)
AMCG00008919 zbtb45,LOC104952775,LOC105021497,LOC101077905,LOC102207372,LOC101487628,LOC102796714,LOC100704009 other downstream 535634 14807297 ~ 14811757 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000340_09207912_09220198 NA coding CI01000340 null 9207912 ~ 9220198 (-)