AMCG00008898


Basic Information

Item Value
gene id AMCG00008898
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 14113461 ~ 14141914 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008898
ACAGAGACAtggtgagagagacagagagacagacagagacagcgACCTGGACACAGAGGGAGTTCACTTGGTCTCGTCCTGTTGAGAGCTCTGCTGAGGATGCCATCAAACAACACCACCAAGGTTGACACCTTCTCTTGCAGCCACCCCAGCGTGGAGGGGTACCGCTACTTTGGGGTGCTGTGGGGGTCGGTGGTGGCGACGGTTGGCACAGTGGGCAACATGATGACCCTGCTCGCCTTCCTGCGGGATCGCCGCCTGCGCACGCCCTTCAATGCACTCATCTTCAACCTGGCGGTGGCCGACCTGTTGTACTGCGCCGCGCTACAGCCCACCTCTGTGGACACCTACCTGCACCTGCGCTGGCGCGGGGGGGAGATTTGGTGCCGCGCCTTCGGGCTGCTGCTCTTCCTCTCCAACAGTGTCTCCATCCTCACGCTCTGCCTCATCGCCGCTGGGCGCTACCTCCTGGTGACACGGCCGGCCACCTCCCAGCGACTGCTTTCACGCCGAGGCCTGGCCCTGCTGCTGCCTGCCACCTGGGCCCTGGCACTGGCCAGCTTTGGCCCACTTTGGCCCATCTATGTCTTCACCCCCCAAgTATGTACATGCAGCTTCCATCGCACCAGGGGGCGCCCTTACAccaccctgctgctgctgttctacTTTGTGTTCAGCCTGGGCTGTGTGGGGCTCTTCTACTTTCTGCTGCACCGCCGGGTCAGAGAGGCCTCCCGTGCGCTGCACCGGTACCGCCTGAGCCGCCGTTCGCAGGCCAAGCCTCCTGGGGCCAAAGGGGGGAGTGGGGCTGAGGACAGCGGGCAGCCCACTCACAGCGTGGAGATCAGCAGTTCCGAAAACAACAGTGTTGTGGAGAAATCAGAGAGAACCCTCCAACCAGACTGCCAAGAAATCCAAAGCACCCAATATGCCCCTGCTCCAGCCCCTGCCCCCTCAATTGCCACTGCCCCtacccctgcccctgcccctgcccctgtcCACTCTCTTGCCACTGTCACCCCTCCTGCCCCTGTCCCCTCTCCTGCCCCTGCTCTGCCCCCTGCTACATCCTCCCCTGAGCAGGATGCGGAGGTGGGCCGTGTGACCCGTATGTGCTTCGCAGTGTTCCTATGTTTCGTGCTGGCCTTTGCCCCCTTCCTGTTGCTCAACATGGTGGACAGCAAGGGCCACGCCCCGCAGCCTCTGCACATGTTCTGTGCCAACCTGACATGGCTGAACAGCTGCATCAATCCCGTGCTATTTCATATGGTGCCTGTCTGCCTGCTCGCcctccacttcctgtttcccaGACTGGCCGTGCGCATGCCCTGTCACAACTGA

Function

GO: NA

KEGG:

id description
K08421 GPR84; G protein-coupled receptor 84

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008898 True 1341 mRNA 0.62 4 14113461 14141914

Neighbor

gene id symbol gene type direction distance location
AMCG00008892 LOC103385083,LOC103368464,LOC101482250,LOC101064460 coding upstream 4461 14103351 ~ 14109000 (+)
AMCG00008893 LOC107695795,LOC106567037 coding upstream 21057 14089653 ~ 14092404 (+)
AMCG00008889 NA coding upstream 99724 14007598 ~ 14013737 (+)
AMCG00008888 LOC107384035,LOC106518043,LOC108235781,LOC101174339,LOC108276103,LOC105937045,LOC103465370 coding upstream 107448 13985171 ~ 14006013 (+)
AMCG00008883 NA coding upstream 129831 13957368 ~ 13983630 (+)
AMCG00008900 NA coding downstream 1292 14143206 ~ 14144894 (+)
AMCG00008899 NA coding downstream 13906 14155820 ~ 14163655 (+)
AMCG00008896 NA coding downstream 85803 14227717 ~ 14245887 (+)
AMCG00008895 pfdn5,LOC102784983 coding downstream 108332 14250246 ~ 14253618 (+)
AMCG00008897 NA coding downstream 112385 14254299 ~ 14271663 (+)
G52100 NA non-coding upstream 425681 13686839 ~ 13687780 (+)
G52044 NA non-coding upstream 636483 13476750 ~ 13476978 (+)
G51970 NA non-coding upstream 798409 13313590 ~ 13315052 (+)
G51969 NA non-coding upstream 801003 13311329 ~ 13312458 (+)
G51968 NA non-coding upstream 802688 13309616 ~ 13310773 (+)
G52361 NA non-coding downstream 400725 14542639 ~ 14545754 (+)
G52364 NA non-coding downstream 410982 14552896 ~ 14553241 (+)
G52372 NA non-coding downstream 418805 14560719 ~ 14561249 (+)
G52374 NA non-coding downstream 420531 14562445 ~ 14562710 (+)
G52377 LOC108235766,LOC107384431,LOC106518056 non-coding downstream 434522 14576436 ~ 14576682 (+)
AMCG00008856 rps26,RPS26,LOC106567051 other upstream 804031 13306495 ~ 13309430 (+)
G51939 NA other upstream 855821 13253814 ~ 13257640 (+)
G51928 LOC108272117,LOC107678215,LOC107581315,LOC107713111,LOC107551923 other upstream 888515 13222320 ~ 13224946 (+)
AMCG00008837 march9,LOC107664138,LOC107593952,LOC107714987,LOC106583285 other upstream 1120736 12980804 ~ 12992725 (+)
G51812 NA other upstream 1186667 12925238 ~ 12926794 (+)
G52349 NA other downstream 340007 14481921 ~ 14483255 (+)
AMCG00008910 NA other downstream 385904 14527818 ~ 14542248 (+)
AMCG00008917 smarcc2 other downstream 596535 14738449 ~ 14754644 (+)
AMCG00008920 NA other downstream 641129 14783043 ~ 14795184 (+)
AMCG00008919 zbtb45,LOC104952775,LOC105021497,LOC101077905,LOC102207372,LOC101487628,LOC102796714,LOC100704009 other downstream 665383 14807297 ~ 14811757 (+)

Expression


Co-expression Network