AMCG00008905 (LOC107733585,LOC107667357,LOC108433193,LOC101485512)


Basic Information

Item Value
gene id AMCG00008905
gene name LOC107733585,LOC107667357,LOC108433193,LOC101485512
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 14467759 ~ 14478114 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008905
ATGGGAATTTATGCTTCAGCCGAGCTGAGAGACTGGGAGAGGATGTGTTATAGAAGGGCCAGGgTGTCTATAGTCAGCCTTATAGCTAATGCCCTCGGCTACTCCGACCTAGGGCCAATTAAGTCTCTCAGGACACTAAGGGCATTGAGACCCCTCAGAGCCTTGTCACGTTTTGAAGGGATGAGGGTGGTAGTCAACGCCCTGGTGGGTGCCATCCCGTCCATTATGAATGTGTTGCTGGTTTGCCTCATCTTTTGGCTGATTTTCAGTATCATGGGCGTCAACTTATTTGCGGGCAAATATTACTACTGCTACAACGAGACAGCAGAGGATTACTTCAAACACACTGAAGTCAACAACAAAACGGAGTGTGATTACCTGATTGAGCAAAACTTCACAGAGGTGCGCTGGAAGAACGTCAAGATCAACTTTGACAACGTGGGCGCCGGCTACCTGGCTCTGCTGCAAGTGGCCACCTTCAAAGGGTGGATGGACATCATGTATGCTGCAGTGGACTCTCGCAAGGATATCTTCATGACAGAGGAACAGAAGAAATACTACAATGCTATGAAGAAACTGGGCTCCAAGAAGCCACAGAAACCCATTCCCAGACCACTGAACAAGGTCCAGGGGATGGTGTTTGATTTTGTGACGCAGCAGGTGTTTGACATCTCCATCATGATCCTCATCTGCCTCAATATGGTAACCATGATGGTGGAGACAGATGACCAGAGCAAGGAGATGGAGAACATCCTCTACTGGATCaacttcatcttcatcatcgtCTTCACCACCGAGTTTGTGCTTAAACTCTTTGCGCTGCGGCACTACTACTTCACCATAGGCTGGAACATCTTTGACGTGGTGGTTGTCATCCTGTCCATCGTTGGTATGTTCCTGGCGGACCTGATTGAGAAGTACTTCGTGTCACCCACACTGTTCAGGGTGATCCGTCTGGCCCGAATCGGCCGCATCCTGCGTCTCATCAAGGGCGCCAAGGGCATCCGGACTTTGCTGTTCGCACTGATGATGTCACTGCCGGCACTGTTCAACATTGGCCTTCTGCTGTTCCTCGTCATGTTCATCTTTTCCATCTTTGGCATGTCCAACTTCGCCTATACCTTCTACGAGATCTGGGAGAAATTCGACCCTGACGCCTCACAGTTCATCGCCTATGCCAAGCTCTCTGATTTCGCCGACACACTGGAGCACCCACTCCGTGTGCCTAAGCCCAACACCATTGAGCTCATTGCCATGGACCTGCCCATGGTCAGTGGGGACCGCATCCACTGCCTGGACATCTTGTTCGCCTTCACCAAGCGCGTGCTGGGCGACAGTGGGGAGCTGGACATCCTCCGGCAGCAGATGGAGGAGCGCTTTGTGGCTTCCAACCCATCCAAAGTGTCCTATGAGCCCATCACCACCACGTTGCGGCGCAAGCAGGAGGAGGTGTCCGCCATCGTGATCCAGAGGGCATACCGCCGATATCTGATCAAGCGTGGCTTCGTCTGCAAGCGCGGCCCTCGGACCAACAAGCTGGAGAATGGCGGCACGAATCCGGAGAAGAAGGAGGGAACACCTTCCACTGCGTCGCTCCCCTCCTACGACAGTGTCACAAAGCCTGACAAGGAGAAACAGGAGGAGAATGATGGGAGGGGGCGGAAAGAAAAGGGCAGAAACCAAAAAGACGTCAGGGAATCTAAgtgttag

Function

NR:

description
PREDICTED: sodium channel protein type 8 subunit alpha-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008905 True 1710 mRNA 0.52 8 14467759 14478114

Neighbor

gene id symbol gene type direction distance location
AMCG00008906 LOC108433193,LOC104932970 coding upstream 11959 14419818 ~ 14455800 (+)
AMCG00008908 LOC108433193 coding upstream 53024 14414349 ~ 14414735 (+)
AMCG00008902 NA coding upstream 89644 14366961 ~ 14378115 (+)
AMCG00008903 dip2b coding upstream 106321 14329331 ~ 14361438 (+)
AMCG00008901 NA coding upstream 159215 14293409 ~ 14308544 (+)
AMCG00008909 NA coding downstream 10419 14488533 ~ 14492579 (+)
AMCG00008912 NA coding downstream 154403 14632517 ~ 14649949 (+)
AMCG00008921 NA coding downstream 345189 14823303 ~ 14832837 (+)
AMCG00008928 NA coding downstream 471766 14949880 ~ 14979753 (+)
AMCG00008930 NA coding downstream 554620 15032734 ~ 15045423 (+)
G52234 NA non-coding upstream 339068 14128487 ~ 14128691 (+)
G52100 NA non-coding upstream 779979 13686839 ~ 13687780 (+)
G52044 NA non-coding upstream 990781 13476750 ~ 13476978 (+)
G51970 NA non-coding upstream 1152707 13313590 ~ 13315052 (+)
G51969 NA non-coding upstream 1155301 13311329 ~ 13312458 (+)
G52361 NA non-coding downstream 64525 14542639 ~ 14545754 (+)
G52364 NA non-coding downstream 74782 14552896 ~ 14553241 (+)
G52372 NA non-coding downstream 82605 14560719 ~ 14561249 (+)
G52374 NA non-coding downstream 84331 14562445 ~ 14562710 (+)
G52377 LOC108235766,LOC107384431,LOC106518056 non-coding downstream 98322 14576436 ~ 14576682 (+)
AMCG00008856 rps26,RPS26,LOC106567051 other upstream 1158329 13306495 ~ 13309430 (+)
G51939 NA other upstream 1210119 13253814 ~ 13257640 (+)
G51928 LOC108272117,LOC107678215,LOC107581315,LOC107713111,LOC107551923 other upstream 1242813 13222320 ~ 13224946 (+)
AMCG00008837 march9,LOC107664138,LOC107593952,LOC107714987,LOC106583285 other upstream 1475034 12980804 ~ 12992725 (+)
G51812 NA other upstream 1540965 12925238 ~ 12926794 (+)
G52349 NA other downstream 3807 14481921 ~ 14483255 (+)
AMCG00008910 NA other downstream 49704 14527818 ~ 14542248 (+)
AMCG00008917 smarcc2 other downstream 260335 14738449 ~ 14754644 (+)
AMCG00008920 NA other downstream 304929 14783043 ~ 14795184 (+)
AMCG00008919 zbtb45,LOC104952775,LOC105021497,LOC101077905,LOC102207372,LOC101487628,LOC102796714,LOC100704009 other downstream 329183 14807297 ~ 14811757 (+)

Expression


Co-expression Network