AMCG00008908 (LOC108433193)


Basic Information

Item Value
gene id AMCG00008908
gene name LOC108433193
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 14414349 ~ 14414735 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008908
ATGGCTGCACCCCTTCTCGCACCGCCCGGACCTGACAGCTTCCGCAAATTTACCCCGGAATCTTTGGTCAACATCGAGAAGCGCATCACCGAAGAGAGGAGTAAGAAGCCCCCCAAGCCTGACAGCAGTCACCGCGACGACGACGATGAGAACAAGCCCCGCCCCAACAGTGACCTGGAGGCGGGCCGCAGCCTGCCCTTCATCTATGGCGATATTCCTTCTAAGATGGTGGCGGTACCACTGGAGGACTTGGACCCTTATTATTTAAACGAGAAAGTGAGTGGCCCTAACCCAGTGACCCCACCACTATCCCCTTCCCACCACTACtcctcccactaccaccactacaGTCTGATACTTGTAACTCCTCCCTCTGAACCCCCTTAG

Function

NR:

description
PREDICTED: sodium channel protein type 8 subunit alpha-like isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008908 True 387 mRNA 0.56 1 14414349 14414735

Neighbor

gene id symbol gene type direction distance location
AMCG00008902 NA coding upstream 36234 14366961 ~ 14378115 (+)
AMCG00008903 dip2b coding upstream 52911 14329331 ~ 14361438 (+)
AMCG00008901 NA coding upstream 105805 14293409 ~ 14308544 (+)
AMCG00008894 asb8,LOC107745463,LOC107563629,LOC107681993 coding upstream 132878 14279340 ~ 14281471 (+)
AMCG00008897 NA coding upstream 142686 14254299 ~ 14271663 (+)
AMCG00008906 LOC108433193,LOC104932970 coding downstream 5083 14419818 ~ 14455800 (+)
AMCG00008905 LOC107733585,LOC107667357,LOC108433193,LOC101485512 coding downstream 53024 14467759 ~ 14478114 (+)
AMCG00008909 NA coding downstream 73798 14488533 ~ 14492579 (+)
AMCG00008912 NA coding downstream 217782 14632517 ~ 14649949 (+)
AMCG00008921 NA coding downstream 408568 14823303 ~ 14832837 (+)
G52234 NA non-coding upstream 285658 14128487 ~ 14128691 (+)
G52100 NA non-coding upstream 726569 13686839 ~ 13687780 (+)
G52044 NA non-coding upstream 937371 13476750 ~ 13476978 (+)
G51970 NA non-coding upstream 1099297 13313590 ~ 13315052 (+)
G51969 NA non-coding upstream 1101891 13311329 ~ 13312458 (+)
G52361 NA non-coding downstream 127904 14542639 ~ 14545754 (+)
G52364 NA non-coding downstream 138161 14552896 ~ 14553241 (+)
G52372 NA non-coding downstream 145984 14560719 ~ 14561249 (+)
G52374 NA non-coding downstream 147710 14562445 ~ 14562710 (+)
G52377 LOC108235766,LOC107384431,LOC106518056 non-coding downstream 161701 14576436 ~ 14576682 (+)
AMCG00008856 rps26,RPS26,LOC106567051 other upstream 1104919 13306495 ~ 13309430 (+)
G51939 NA other upstream 1156709 13253814 ~ 13257640 (+)
G51928 LOC108272117,LOC107678215,LOC107581315,LOC107713111,LOC107551923 other upstream 1189403 13222320 ~ 13224946 (+)
AMCG00008837 march9,LOC107664138,LOC107593952,LOC107714987,LOC106583285 other upstream 1421624 12980804 ~ 12992725 (+)
G51812 NA other upstream 1487555 12925238 ~ 12926794 (+)
G52349 NA other downstream 67186 14481921 ~ 14483255 (+)
AMCG00008910 NA other downstream 113083 14527818 ~ 14542248 (+)
AMCG00008917 smarcc2 other downstream 323714 14738449 ~ 14754644 (+)
AMCG00008920 NA other downstream 368308 14783043 ~ 14795184 (+)
AMCG00008919 zbtb45,LOC104952775,LOC105021497,LOC101077905,LOC102207372,LOC101487628,LOC102796714,LOC100704009 other downstream 392562 14807297 ~ 14811757 (+)

Expression


Co-expression Network