AMCG00008910


Basic Information

Item Value
gene id AMCG00008910
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 14527818 ~ 14542248 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008910
ATGCACTGGACCCCAGAGCACGCCCAGCCACTGACACAGTGGCCCGAGCAGCACCTGGACGTCTCCTCCACCACGTCGTCTCCGGCGCACAAGTCGGATCTGTACCCCAGCAGCCGGCAGCGCTACAACTACGCCTGGGCCAATGACGACATCTCCGCGCTGACCGCCTCCAACCTGCTGAAGCGCTATGCTGAGAAGTACTCCAGCGTGCTGGACTCGCCCTACGACCGCGCACCGGGGTCGGGCATCTACTCGGAGGGGGCGTTTGGGAGTCTGAACGGACAGAAGAGTGAAACGGAGCCCTGGTCCATGTCACATGGCCCCGAGGGGGGGTACTCACTAGGCCCCCCACCACCTCCTGGCCACGAGGTCCTGGGGGGCTCAAAGGGCACAGCCACGTCGGGAGGGCCCCCAGGCCCTGGCTCGGTGTCTATCGTGAACAGTAACCTCTCGGACCCTGGCTACAGCGGTGCGGGCTCTTGCAGTGGCCCCCCCACCCAGGAGTACCCCCCCACCTACAATGGCACCTACCTCTCCTCTGGGTACTGCACCCAGCCCGGCCCTCCTGGTCTGCTGCAGACCACCACCAGCCTTGTGCCCAGCTACACCCCCCCTGGATCTGTCTACAACTACCCTCCTAGCAGCTACCCCCCTCAGCCTGGCTATGCCACTGTGCACCCCCCTACTCCTTACCTGCCCTCGGGCCTGGCTGCTCCCACTCCCCTGCCTCCACGGCCGACTGTGATGGGTGGCAGCTATGGGTACCAGGGGCACGGGGGGCTGGAGCCAAACTCATTAAAGAGAAAGGCATTTGAGAtggggggggtggaggaggaggagggggaagagGCGCGATACCGTAAATATGGCTACGATCCCACCAAGCCTGGCAGCTCCCCCTACAGCGCAGACAAAGAGTGCCGTGGCAACGGCTTTGCAGGTACAGACCCGCCGGGCGCCGGGTACAAGCCAGGCAAACCCCCTGCACAGCCTGGCCTGGGGGGCGATGAGGGGGACAAATACGGTGGGCTGAAGCCTCTGGTGTCGCCACCCTACAGCGGCGGGGGAGAGGCAGGGCTGCGTGCAGAGTACAGCCCCCCAGTGGGCCTGGCTGGGGAGAACGGCGGAGGGGAGCATGGTTTTGCCCCCTCCCGCGTGGCAGTGAAGCTGCCGGCCCCACCCGTGCAGTCAGAGGAGTTACTGAAGACGGCCGAGCCCCGACTGCTGGAGCTGGTGAGTGGGGAGGTGCTGCAGCGCGTACCGGCGCTGGGCTGGGGGGAGCTGGTCTGCCACGGTGCACTCAAGGCCGCACTGGAGGAGGAACTGCTGTGGCCCGCATTGCGCCCCAGCCCTACCAGTCGCCCGCCCAGAACTCTGCTGTTCTTCGGCCCTCGGGGGGGCGGCAAGCCCACACTGGCACGCTGCCTGGCTGCCCAGCTGGGCGCGGCATTCTTCCGGCTCAGTGGCGCGGTTTTGGCCTCACAGTGGAAGGGCGATGCCGAGCAGATCCTGCGCACCACCTTCCTGCTGGCTGGGGCACGGCAGCCCTCACTGGTGTTCGTGGACGAGCTGGAGGCACTGAGCCCCGAAGATGGGCTGTGGGCGCAGCTACTGTCCTGCCtggacacagcacagcagggcGGGGCGGGCGCTGTGCTGGTGGTAGGAGCCACAAGGCGGCCTGATGCGCTGGAGGAGGCGGCACACAGACGCTTCTCCAAACGCTACTACGTCGGGCTGCCAGATGCAGCCGGGCGCAGGCAGATCCTGCTGCAAGCGCTGGGCCAGCAGGGGGCATGCCTGAGCGAGCGAGAGCTGGGCTGCCTGCTCCAGCGCAGTGAGGGCTTCTCCACCCACGAGGTGCTGCAGCTCTGCCAGCAGGCTGCCGCCTCGGCCAGCGCCAGCGCCCCCCCCACGCCCCTGCATAGCCTGCCTGCCCTGCCCCTCTCCTTCAAGGACTTCGAGAATGCCTTCTGCAAAGTGCGGCCCCACGCCACGCCCAAAGAGCTGGACACCTGCATGGAGTGGAGCAAGGTGTACAGCCACTGA
>TU65523
GAGAGAGAGGGGTCCCATATGTGGAAAATAGCATTGCATTGCACAGAGCAGTCTGCCTGCACAAGGGAATATTTTCCAGCTGCAACTGTGATAGAGGAGATGCAGTCATGAATAGTTGCAGGGCTGTGTGTTGTGGAGAGGCAGCGCGTGCAGGCAGCAGGAATGGAGCACAGCCGGACAATGTCTGACCAGGAATTCACTGCTCCACCACAACGGTCCTAACAGAGCCCACTGCCCAGAATGCTGAGTCCTGTTGTCCCCTATAGTCTGTTGAAGATGCACTGGACCCCAGAGCACGCCCAGCCACTGACACAGTGGCCCGAGCAGCACCTGGACGTCTCCTCCACCACGTCGTCTCCGGCGCACAAGTCGGATCTGTACCCCAGCAGCCGGCAGCGCTACAACTACGCCTGGGCCAATGACGACATCTCCGCGCTGACCGCCTCCAACCTGCTGAAGCGCTATGCTGAGAAGTACTCCAGCGTGCTGGACTCGCCCTACGACCGCGCACCGGGGTCGGGCATCTACTCGGAGGGGGCGTTTGGGAGTCTGAACGGACAGAAGAGTGAAACGGAGCCCTGGTCCATGTCACATGGCCCCGAGGGGGGGTACTCACTAGGCCCCCCACCACCTCCTGGCCACGAGGTCCTGGGGGGCTCAAAGGGCACAGCCACGTCGGGAGGGCCCCCAGGCCCTGGCTCGGTGTCTATCGTGAACAGTAACCTCTCGGACCCTGGCTACAGCGGTGCGGGCTCTTGCAGTGGCCCCCCCACCCAGGAGTACCCCCCCACCTACAATGGCACCTACCTCTCCTCTGGGTACTGCACCCAGCCCGGCCCTCCTGGTCTGCTGCAGACCACCACCAGCCTTGTGCCCAGCTACACCCCCCCTGGATCTGTCTACAACTACCCTCCTAGCAGCTACCCCCCTCAGCCTGGCTATGCCACTGTGCACCCCCCTACTCCTTACCTGCCCTCGGGCCTGGCTGCTCCCACTCCCCTGCCTCCACGGCCGACTGTGATGGGTGGCAGCTAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008910 True 2049 mRNA 0.67 1 14540200 14542248
TU65523 False 1035 TUCP 0.62 3 14527818 14540958

Neighbor

gene id symbol gene type direction distance location
AMCG00008909 NA coding upstream 35239 14488533 ~ 14492579 (+)
AMCG00008905 LOC107733585,LOC107667357,LOC108433193,LOC101485512 coding upstream 49704 14467759 ~ 14478114 (+)
AMCG00008906 LOC108433193,LOC104932970 coding upstream 72018 14419818 ~ 14455800 (+)
AMCG00008908 LOC108433193 coding upstream 113083 14414349 ~ 14414735 (+)
AMCG00008902 NA coding upstream 149703 14366961 ~ 14378115 (+)
AMCG00008912 NA coding downstream 90269 14632517 ~ 14649949 (+)
AMCG00008921 NA coding downstream 281055 14823303 ~ 14832837 (+)
AMCG00008928 NA coding downstream 407632 14949880 ~ 14979753 (+)
AMCG00008930 NA coding downstream 490486 15032734 ~ 15045423 (+)
AMCG00008932 si:ch211-51c14.1,LOC108427330,LOC107732900,LOC107674129 coding downstream 508447 15050695 ~ 15065008 (+)
G52234 NA non-coding upstream 399127 14128487 ~ 14128691 (+)
G52100 NA non-coding upstream 840038 13686839 ~ 13687780 (+)
G52044 NA non-coding upstream 1050840 13476750 ~ 13476978 (+)
G51970 NA non-coding upstream 1212766 13313590 ~ 13315052 (+)
G51969 NA non-coding upstream 1215360 13311329 ~ 13312458 (+)
G52361 NA non-coding downstream 391 14542639 ~ 14545754 (+)
G52364 NA non-coding downstream 10648 14552896 ~ 14553241 (+)
G52372 NA non-coding downstream 18471 14560719 ~ 14561249 (+)
G52374 NA non-coding downstream 20197 14562445 ~ 14562710 (+)
G52377 LOC108235766,LOC107384431,LOC106518056 non-coding downstream 34188 14576436 ~ 14576682 (+)
G52349 NA other upstream 44563 14481921 ~ 14483255 (+)
AMCG00008856 rps26,RPS26,LOC106567051 other upstream 1218388 13306495 ~ 13309430 (+)
G51939 NA other upstream 1270178 13253814 ~ 13257640 (+)
G51928 LOC108272117,LOC107678215,LOC107581315,LOC107713111,LOC107551923 other upstream 1302872 13222320 ~ 13224946 (+)
AMCG00008837 march9,LOC107664138,LOC107593952,LOC107714987,LOC106583285 other upstream 1535093 12980804 ~ 12992725 (+)
AMCG00008917 smarcc2 other downstream 196201 14738449 ~ 14754644 (+)
AMCG00008920 NA other downstream 240795 14783043 ~ 14795184 (+)
AMCG00008919 zbtb45,LOC104952775,LOC105021497,LOC101077905,LOC102207372,LOC101487628,LOC102796714,LOC100704009 other downstream 265049 14807297 ~ 14811757 (+)
AMCG00008931 pp12c,LOC106564933 other downstream 440325 14982573 ~ 15020846 (+)
AMCG00008960 rps11,rs11 other downstream 1313976 15856224 ~ 15863670 (+)

Expression


Co-expression Network