AMCG00008913


Basic Information

Item Value
gene id AMCG00008913
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 14671441 ~ 14681624 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008913
GAGAACTggatatttttacaaaatgcgGCGCTGTAGCAGGAAGGCGATGCTTCAGAAAACATAGGACAGTCGTGGATCTGTTAGACAAGAACAAAACCCAGCcaaactaaaaacatacattgGACCCGGACATATCGGATCCTGAAGAAGAACAAGATTGTAGTTTGTGCAACCTGTCCTCTCTCCCGTGCCCGGCATTGTCAGTGCCCTGAGTGACGACCTCCTCACATGCGTGGCACCATGGCTTCCTCTCATGCCCTGCGAGAGCAGAACTGGGCTGCTGGCACACGGGGGGCAGCTCCTGGCTTCAGTAGCCGGGCCCGTGACCCTGCCCCAGGTACAGGAGGAACCCTCAAACCACTGAGCTCAAAGACCAGTGCTACTCCCCGGGGGCTGTGCATCGAGAACCAGGACCCCTCACTGCCTCAAGACTGTCCTGTGAAGAGTGCCCCCCTGGGGGGTAAAGTTCAGAAGAAGAAGCCATGCACCAAGCCAGTACCCTTCAAGCTCTCTGGACCTCGGGCCACCAGGCCGGCAGCATTGACCAAACAGACCATGTGTAAGACACCCCAACCTGGACCACTGCCACCAAGCCAGACTACACAGCCAGAAATCAGTAACACACTTGAGCTTACTGTCACCAAAAACACCGCCCAGACTGTATTACAGATGGATGTTCATACAGACCAGTCTGTAAATGCCAGGCCTTTTAACATTGCCCAGTCTGGACACCCAGTCATCAGCAGGTCAATCCAGTCAGTGTACCCTCTATGCAGTAATACAGCCAAGTCTGTACATACTACACTGCCCAGTACTGCCCAGTCTGTACATCCTGAACTCAATGCAAATGTCAACCAGAGGCCTGTTCAAGCAATTCTCCTTGCAAACCCATCAATCAACAGTGTGATCCAGTGTATGCAGTCAACAGTCCTGCACACTACCCAGCCTGTACCATACCACCTCACTGAAGCAGCCCAGTTCAGTGCTTCTTCAGTCACCACTGCAGAGGAATCTACACATCAGGCCTCCTCGAAAATGAATGATTTTGAATTACCAGCACCAAGCTGCACAGCTCAGTCAAGCAAAAACACCCAGCTGATGCCTCCTACCACTCTTGAAATGCCCAGTTGTATGGTCAGGCCTAGAATCCCAGGAGTGAGCAGTACAGAACAGTCCTTACATCAGGCATCCAGCTACACTTCTGGGATCATGCAGTCTGCACTGAGTCCCCCTGCCCAGCCTGTATACACATCCCTGAGCTCAGCTGCTCCTTCTGCTCTGAACACAAGTTACCCTGTGCACCCAGCTCCCAATTCTCCCAATGCCTGTGCAAGCCAGTCTTTTCTGCACAGGCCTGCACTCTGTGACACAGGCCTCTCTGCATTTGGAGCACTCCATACAAAAAGCCTGTCACTCAGTAATATGGACcagtctttaaaaaacacacaaccctcTCTGCACCTAAACTCGGGCAGCATGGCTCTAGCGGGGCACCCGGTACTTAGTAATGTGACCCAGTCCTCTGAGTCGGCCAGCAGCACCACGGCTAACTTTGGTTTGTATACTGATCCAAATCTAGAACACAATGGTTGCTCTGCTTCCTCCTGCTGTGGCTGTACCACCCTCCACAGTGAAGAGAAGATGAGGCAAGATCAGTCAGTGCACACCCTTACCTGCAGCTCACGGTTGCCTGCACAACTTGCCTCTCTCACCATCAGTCAGCAGGGTTGTGGACGGATGGCACAGATTTGTCGGCAGGAAACAAGCGACACAAACCCAGGAGACTCGGAAGGGATGGGCTGGTCAACTCAGCCACAGCACCAGAGTGTTGACCAATCTGTAAAGTCAAGGCAAGAAAATAGGGATCAGTCTGCAAAGCCACTCGATTCAGGTATTAAAGAGAATCCCAGCACCTTTTCAAAACCAAAGCCCATCTCCCAGGACAACTCTAGTACAGCATTGGCAGGTGGTGTGGTGCAGTTCTCCCCAGATCCTGTGGCACTGCGCACTATTCTGCAGAATGAGGGGCTGAGAGCCGGGGTGGCTGTGGGGTCCCTGCTGGAGAGGAGCTCTGTGCGTTCTTCTGTCAGGGGCAGCTCTGTGTACCTGCCCCAGAGAGTTTTGGTCAAGAGAGCGCGGCCTGCAGGAATAGTCAGTGCAGCTGCAGAGCAGGCCATGACCCCAGCACAGCGGTGGACCCCCCAGAGAGTGCCAAACACGCGTTCACTGTGCAGGAAGGCACAGTCTGTCCAGCGCACTCCTGAGGGCGTGGTGCAGCGTCTGTTCGAGGAAAAGGAGGAAGTCCAAGAGCATGGACAGGAGgaccagggagagagagagcctgaGATGCAGTGCACAAACACTGCCCCAGCCATACcgcagagtgagagagagggagccagAAAGAAGGGAGTGTGTGGGGGCCTCCCGGACCCCGAGAATGCCAAGGTCACTGCGCCCTTCTTCCAGGCCCCGCACCGCGAATCTGTCATTGTATTCTCCCACAGCCAGAGGGTGTACAGGGGCATGGGGCATCAGGGCAGTGCCCAGGCTACACAGGATGGCCCTGGTGGGGGGTTGCATGTCCCAATTGACCTCAACTCCCACCCCCACCATGCTGCTGAGGCTCCCCAGACAAATCAGCCCCCTAACACCCACCACACTGCCCCTCTGGAGCCCTCCGTATGTCCCAGAGACCTGCCCCTCGCGGGGAACTCCGCTGCAGATCCAGGTAGTGAGGTGCGGTGGTGCATTCCAGCGCCTCCCCCTGGCTCGACGGTGAGGCGGCACCCTGCACTCGGCCCCTCTATTCAGGACATCCTACTGGACGAAGAGTGTGCCGCCTATACCTGCCGTGCCCCCAATCAGCCCCGCCCCCCACGCCACACCTGCTGTGACCCATTGGCTCGAACCCTTGACCTGCAAGACTCCACTCACACTGAGACCTCGGCTTCCAGACCAGGTTCTGTGACCCTGCCTTGGCCGAGATCGGCCACTAGAGGGCCCTCATCTGTTGTGTCCAGTCTTCCTTCTGACTCAtGCTTCATACCCATTTTCCTGCACTCCTACTCCTCATCCCTTGTTTTCCAATCATCCTGCTGAGAGCAGACTATGCTGGGGGATTTGTGTCCTGGTAGGGGCTCTGTCTCCCTGTAACACCCGTCTTCCCTCCAATACTACCTGTCAATCAAACGAAGGAgcaccaacaacaaaaagtagAGCACAGAGACTGgcaacaagcaagcaaacaaaactgtCTTCACTGAGATGACTGAGGAGACCTCTGCGCCTTCAGCCTGCAGGTTTTGTAAAACAACCTGGAACACACATTGTATACAAACTGAAACATTAGGTAAATTTCATGAACTGTCAAGGCACAGAAACCAGAGAGGCTGCTGACTGGCCTGAACGGTGGAAAATGAGTAgaactgtaattgtaattgtaaatttaaattcCTGGAGCTACAGTTACAAGAGTTAGGCCGGTTTCTGCACTGTGAGGAGTCCTCTTCAAGCAAAGACCATTCACCACAGCGGAAACTGAGGAAAATGGCGAGTCGAGTCAGTGCAGCTGACTGGACTGCTTTACTTTGCCACCTCAAATCTGAAACGTGATGTCTAAAATACAGAACACTAAGCAGATGCACTGACTGGCTGAATGTTTATTTGGAACATAACCTGCATTTCCTGACACAGCTGGAGAAAACAATTGCTTACCAGCCACAAACTCCTTATTCTGCAAGATCACTTTTTTTGGCAacacatttattgtttattttgtgttttgaactTTTTCTATTACAGATTACCAAGCCAGTGCAATTATCTAagtttgtttaatcatttttatgtaCAGCATTGACAATAtgaataagtaagtaaataaattaataaataataatgtacaatgtCTATAGAAGTGTTTGTGTGCACCCAGAGGAAGATGGCCAAccgtgtg

Function

GO:

id name namespace
GO:0005657 replication fork cellular_component
GO:0005694 chromosome cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component

KEGG:

id description
ko04110 Cell cycle
ko04111 Cell cycle - yeast

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008913 True 3958 mRNA 0.52 12 14671441 14681624

Neighbor

gene id symbol gene type direction distance location
AMCG00008914 LOC105897308,LOC103368323,LOC101065051 coding downstream 4671 14653450 ~ 14666770 (-)
AMCG00008916 NA coding downstream 59214 14605976 ~ 14612227 (-)
AMCG00008915 LOC106583168 coding downstream 83491 14570452 ~ 14587950 (-)
AMCG00008911 NA coding downstream 176177 14492170 ~ 14495264 (-)
AMCG00008907 NA coding downstream 278423 14390189 ~ 14393018 (-)
AMCG00008924 myl6b,zgc:153867,LOC105013534,LOC106950810 coding upstream 75015 14756639 ~ 14765251 (-)
AMCG00008925 NA coding upstream 85332 14766956 ~ 14770430 (-)
AMCG00008926 NA coding upstream 114726 14796350 ~ 14797477 (-)
AMCG00008927 NA coding upstream 119145 14800769 ~ 14805666 (-)
AMCG00008922 chmp2a,bc2,LOC107552765,LOC107582752,LOC107727322,LOC106589279 coding upstream 130250 14811874 ~ 14818996 (-)
G52387 NA non-coding downstream 73023 14597967 ~ 14598418 (-)
G52363 NA non-coding downstream 125691 14542556 ~ 14545750 (-)
G52362 NA non-coding downstream 128942 14542066 ~ 14542499 (-)
G52355 NA non-coding downstream 157363 14513877 ~ 14514078 (-)
G52308 NA non-coding downstream 293111 14373591 ~ 14378330 (-)
G52421 NA non-coding upstream 50499 14732123 ~ 14733797 (-)
G52518 NA non-coding upstream 312946 14994570 ~ 15006197 (-)
G52513 NA non-coding upstream 313292 14994916 ~ 15023128 (-)
G52594 NA non-coding upstream 487698 15169322 ~ 15172366 (-)
G52621 NA non-coding upstream 556431 15238055 ~ 15239115 (-)
G52187 ptges3a,ptges3,LOC107745455,LOC107570321,LOC108433158 other downstream 687548 13938451 ~ 13983893 (-)
G52099 NA other downstream 984704 13685335 ~ 13686737 (-)
AMCG00008860 NA other downstream 1346214 13316867 ~ 13325227 (-)
G51974 rps26 other downstream 1362016 13307422 ~ 13309425 (-)
AMCG00008853 ARF3,arf3,arf3a,LOC106921537,LOC102781726,LOC106954774,LOC104956878 other downstream 1409619 13257698 ~ 13261822 (-)
AMCG00008918 c1ql4b,LOC107673443,LOC107711019,LOC108440793,LOC107585204,LOC108271740,LOC107667333,LOC108432462,LOC100702077,LOC103376602 other upstream 12206 14693830 ~ 14715322 (-)
AMCG00008923 NA other upstream 159083 14840707 ~ 14865988 (-)
AMCG00008934 NA other upstream 350723 15032347 ~ 15057206 (-)
AMCG00008951 ap2a2,LOC106587467,LOC106562310 other upstream 788050 15469674 ~ 15505517 (-)
AMCG00008957 NA other upstream 922201 15603825 ~ 15639130 (-)

Expression


Co-expression Network