AMCG00008917 (smarcc2)


Basic Information

Item Value
gene id AMCG00008917
gene name smarcc2
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 14738449 ~ 14754644 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008917
AGCAAAGATGGCGGTACGGAAGAAAGACGGCGGCCcgaatgttaaatattttgagGCGTCCGACACGGTTTCGCAGTTCGACAATGTCCGGGTCTGGTTGGGCAAGAATTATAAAAAGTATATCCAGGCAGAGCCGCCCACTAACAAGTCCCTGTCCAGCCTGGTGGTTCAGCTGCTGCAGTTCCAGGAGGAGGTGTTCGGGAAGCACGTCAGCAACCCGCCGCTCACCAAGCTGCCGATGAAATGTTTCCTGGACTTCAAGTCAGGTGGTGCTCTATGTCACATCCTGGCAGCAGCATACAAGTTCAAGAGCGACCAGGGCTGgCGGAGGTTTGACTTCCAGAACCCGTCCCGAATGGACAGGAATGTGGAGATGTTCATGACCATTGAGAAATCGTTGGTCCAGAATAACTGTCTCAGCCGGCCAGTCATATTCCTCAGCTCGGACATCGAACCCAAGCTGCTAGGCAAGCTGAAGGACATCATCAAACGCCATCAGGGCTCAGTGACGGAGGAGCGGGCGGCCAGCTCCCACATTGTGGTGCCCATCCCGGCCAGCCTAGAAGAGGAGGAGTGGGTGCGGCCGGTGATGAAGAGAGACAAACAGGTGCTTCTGCACTGGGGCTACTGTCCTGACAGTTATGATACCTGGATTCCAGCCAGTGAGGTGGAGGCAGCTGTGGAGGACCCCCCAACTCCAGAGAAACCCCGCAAAgtgcATGCAAAGTGGATCCTGGACCTGGACTGCTTTAACGAGTGGATGACAGAGGAGGACTATGAAGCGGGGGAGGGGCTGCGCAGGAAGCGCATTTCAGCCAAAACGCTGACGGACGAGGTCAGCCCCCCTGACGGTGAGCGGCGGGACAGGAAGCCTGGGAATGCCAAGAAGAGGAAAcgctccccctctccctcacccaCCACCACACCTGAGACCAAGAAGAAGAATGCCAAgaaggggccgGCGACTCCCTATGCCAAGTCAAAGCGCGGCCACcgtgaggaggagcaggaggaccTGACCAAGGAGCTGGACGAGCCATCACCAGTGCCTGCGGTGGAGGAGGTCACGCTGCCCAAGACCGtaAACACTAAGAAAGATTCAGAGTCTGCGCCGGAGGAGGAGCAGGCCAGCCCCAGTGTGAGGGGGGAGCCGCTGAGGGGGACTGATCTCCACGAGGACAATGTCACCGAACAGACCCACCATATCATTATCCCCAGCTATGCCGCCTGGTTTGACTACAACAGtgttcATGCCATCGAGCGCAGAGCCCTTCCAGAATTCTTCAATGGCAAGAACAAGTCCAAGACCCCTGAGATTTACCTGGCCTACAGGAACTTCATGATTGACACATACCGCCTGAACCCCCAGGAGTACCTGACCTCCACCGCCTGCCGCCGCAACCTGGCTGGGGATGTGTGTGCCATCATGAGGGTCCATGCATTCCTAGAACAGTGGGGCCTGATTAATTACCAGGTGGATGCAGAGAGCCGCCCCACCCCGATGGGCCCCCCCCCCACTTCGCACTTCCACGTCCTGGCTGACACTCCCTCTGGCCTGGTGCCCCTGCAGCCCAAAACATcccagACCCCCGCCTCCCAGCAGATGCTCAGTTTCCCAGAGAAGGTGAAGGAGAAGCCGGCTGACCTGCAGAACTTTGGCCTGAGGACAGACATGTACAGCAAGAAAAGTGGGCCAGCCAAGaGTAAGAGTGCAGCCAGCGCCACACGGGAGTGGACAGAGCAGGAgaccctgctgctgctggagGCTCTGGAGATGTACAAAGACGACTGGAACAAGGTGTCGGAGCACGTGGGCAGCCGCACGCAGGACGAGTGCATACTTCACTTCCTGCGGCTGCCGATCGAGGACCCGTACCTAGAGGACAGCCAGGCGTCTCTGGGGCCTCTGGCCTTCCAGCCCGTCCCCTTCAGCCAGGCGGGGAACCCGGTGATGAGCACCGTGGCATTCCTGGCCTCCGTGGTGGACCCCCGTGTGGCCGCCGCCGCAGCTCGCAGTGCACTGGAGGAGTTCTCGCGGATGAAGGAGGAGGTGCCGTCAGCGCTGGTGGAGGCCCATGTGCGGCGGGTGGAGGAGGCAGCCCGGGCGAGCGGCCGGCAGGACCCCCTCGAGgacaagagagagagcaagGAGAGTAAGGAGGGCTcgctggaggaggaggacaaaCAAGGAGAGAATGGAAAGAAGGAAGAAGAtcgagggagagagggagaaggggagagagaaggagagaaggcAGACCCTGAGATGGGTgatggagagaaggagaaggagggaaAGGAAGGCTTAGAAGAAGGGCGAAGGGAGAccgagagtgagggagagaggagggcaAAGATGAAGAAGCTGGAGATCAAGCTGAGGCACTTCGAGGAGCTGGAGACCATCATGGACCGCGAGAGAGAGGCGgtcagaggtcagccCATGGGTCTGGGCAGCAGCAATCACAGTGATGGTGACAGGCTGACCACAGCCCTGTAG
>TU65605
CCAGCCCCCCACCAGCGCCACCCTACACCACGAAGAGCCCTGCCCCCCCAGTGAGACGAAGGgacgagagcgagagagagacagagagactgtaAACTGAGACTCATCCTGAGGATGGATGGGCAGCAGACAGAAGAGCAGCAGAAACTCCAGTAAAAGTGGAAGGACCCGTTTTCTTTTTATCCGTCCGCAGTGTGTGTGACCCAGTTGGGTCCTTGTTTCACCAGCGCAATGTCACTTGAGGTGGCAGGTTAGGGGATGTTGGCCCTGGCTGTCTCACACGGGTGGACTGGCTTATGATCAACTGGCCAGTGCAGTCTGATCATGGGGTCATTGTCACTGCCTAAAGGGACAGTCAGCCAACGCTGGCCAAAACAACAACTCTCCTGGACAGTGTTTGATCTGAACTAAAGCATGCAGGCCCTTCACAGCCCTTCAGTATATACTTCAGTATAATGGAACACAAGGAGCTTGTTGGACCTGCAGAAACACTGCCAGGAgtttgtataaatgtgtgattGATGGCTGATACAGAagttattgttcttattatgaTGATCTTTGCTGTTAATCTCCCTTTAGCTGAGGGAGCTAGttctctgtgtttttctctgaaGCTCATTTTCATTGTTACCACTAACAGCCCAGTGGTAGGGTTCTGGTTATTTTGCTGCTCTGTCTggcaggtcagaggtcagccCATGGGTCTGGGCAGCAGCAATCACAGTGATGGTGACAGGCTGACCACAGCCCTGTAGGGAGGTCTGGGTTTCCACCACTGCGCTGTAAGCTTCCTCCCTAAGGCCTGCTgccggcctgcctgcctgtccgtgtgtctgtctcGGTTCCAGTGCCGAAGGAGGAGTGCTGGCTGCTTGTGCGCCACTCCCTCCCAAACTGATTCAGTCCTTAGGAGTCAGAGCCAGGCTGTCCGAGCCGAACCAGAGCCAGCACTGACCCAACCCCATCACTGGGCAGCTCCTAGCCCAGTGTCCAGACAGGGTGTGTAAATAATGAAGGTAGGCTGTTCCAGTCACAGCCAGTCTCTCCTCTAAAATATAGGTCAATGAAACGAGAAGAAgtagaaaatataaataccaacacattttgtgttcattgtacattacttattttatatttttactgttttatttttactgtaattatgctattgttgctgtttttatttttgaatatgtatctatatatttatctgtCCATCTCTATCTCTGTCTTCTCTGTCTATTTCTATCTATTAATATTCAGATACGGACTTCGTTATTTTCTGAGTGTCTCTGCAGCTGTAGTGTTCTGTTTTCTTTGGGTCTGacctgtgacctctgacctgttGTGTGGCTGTCTGCAGTGGGGGACCCTGTGTGTGGGCACTCCCTCAGCTCTCActtacttaattgatctaattgttTCTTCAGTAAGAACCTGTtgtggtcctggagagctccaGTCCTTCTGGTTTTAATGATGTCTTcagcaaagaaaatatttgtcctcactaataaaatgaatatttttttcagttaagTAATAAGGAGCTTGAGAGATATTAAAAGGCAGAAGACCCTTGGGCCCCGGCACTGAGGGGGCAGCACAATGGGGCCCcacactgcagctctgtgtttctgtgcaggTTAGTGGGTCCATTGTGTCATAGATACCTGGTATGATACTGAGTGATTCTGTTTGCAGACTGACCCCTCTCTGTTGTAGATGTTTTCTTCATGTTAGCTCTGCTTCTCTCTGTGCtgatgtcagaaaaaaaaacataaaaaaatgaagaaaagaaaaacataaattgcCAAGCAGAAACACTCTTATTTTCAAAGGAAATGGAAACAAGAAAAAGTTGAAGAATAAACATATTTGCTGATGAAGGTTGTTAAACGTCAGccttctgtctctgtgtgattCTGTGCTCCTCTCCCTGCATGGTGACTGTGGGCTTAACCTAATCAAAACTCTGACTTACCAATTAATTGCAATCAGATACTACTTTGAAATCTATCATTCACTGGATGGTCAATGTGAGTCTGTATTGTCAGGAAGCGAGTTATGGATACAGTGATCCTCGTGTGCTGAAATGTGTGTgcaacaattatattttgaagcattttgtgCATTTATGGATTGCCTGACCGCGTGAGCTCTGCTAACTGTTAGACACACTCCCCTCTGGCTGAGTTGTAATGATGCTCACCCTACCCACTGCAGCATGCCCTTGCATGCGCTGCAGCTCCTCTGTTAGCTGCCTGGAACCTTATAATAGTACCCTGTCTCAGGACACCCATCGCACACACTATATTAAAGAAAGGCTGGGCGCTGTTTCTTAAGTTAGGGAAGTTGTGGCAGGAGCacctgtgtttaaaaacaaattcctgtttttgtattgaaatagaATCAGTGCAGTTTGTCTTATCAGGGTTAGAGAGCAGAGGCACACCTTTGTATAATGCTGGAGGGACAACTGAAGCTGGGATTCTAGCACCTCTGACTACAGTAAGTAAACACATGTCTGGAGGCCTTAAATGGTTAAAGGTTCTTGTAGGGAGTCTTCTGATGTGGAGCCAGTGACCTTTCCTCACAGCATAGGCAGCATTGTTTCACTTTCCAGACCCCACTGTTTTTCCTGATCACCTTTCCTAATATGGTATTGCCCAGTGCTATGTGTTTACAGCACTGGGGATGGGTTGGAATGTACCAACGTAAATTGAATAAAAGGGGGGGATAGCATTTCATGGGTCCTCAATGACAAGGTCAGTGACGATTGTTGAGGTCTCCTAAACTTTGCTTTTGCAATCTGGCCATGTGGATTGCTGATACCTGTTtcaaagtgtttgtgttttagtgtgAAAGACATGTGCTTTGCtcattgtgtgtatttatttacactgttaATACTTAGTATTAAATATTGgtcaataaatcaaaacatttcaatttttatattCATCTTTCTCAGTTGAAGTAAACCAAGAGCAGAAGATTGTCAGACCAAAGATATTAGATCTGGATTTACAAGTATTTTAAGTGTTAGACGTGTTAAATCTAAACgtataaaatgtgtatacatgGCTTGAGTACCAAACAAATCAATGTGAATGACCCAGGTATTCCCACAGTAACCTTAAAATGTGTGGAGCATAGGCACACTGGCCATTGGGCAATTCTTGCATTGGGCCTATCCATTTATTAGTTTGGTGGGCTGGTTGATTCCCACGTGGGCCGGTCACCACATTGCCAAtaaccccccccatccccccacccccggacCGCACTTTATCGCCCCcctgggtaaaagtccaggactgttttttggtcccagtccgcccctggtGTGAAGTATAGATTCGACACAAGACCCACTTATTTGATGAACAATTAAGAAGATCTTCACAGAAGCGTAAGCTTTATCTGTGTAAGAAGGGATGATCTCCTTTTAAGGTTACCCCACATCATATGAAATCACTAATGCAGTGGAGAGACTGGTTGAAGAGGCCTAGGCAAGTCAGGCATTTGTGTAATGTATGGTGTAATGTATGGTTTGTAATGGAATGATCTCTGGAAATGTTTAACAGAATTGCcttatttgaaaactgaataaaatgcaaaacagaagagaaaggaTTGTGACTAAATGTTTGAAGTGTGGAAAACACTAAAAAGTAGAACCTTGGAATTTGTATGCAAACAATAGTTTAATCATTTCAGTAGTGTTAATAGGCAGAAT

Function

symbol description
smarcc2 Predicted to enable histone binding activity. Predicted to be involved in ATP-dependent chromatin remodeling and positive regulation of transcription, DNA-templated. Predicted to be part of SWI/SNF complex; nBAF complex; and npBAF complex. Orthologous to human SMARCC2 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008917 False 2500 mRNA 0.59 24 14738449 14751657
TU65605 True 3745 lncRNA 0.44 2 14750421 14754644

Neighbor

gene id symbol gene type direction distance location
AMCG00008912 NA coding upstream 88500 14632517 ~ 14649949 (+)
AMCG00008909 NA coding upstream 245870 14488533 ~ 14492579 (+)
AMCG00008905 LOC107733585,LOC107667357,LOC108433193,LOC101485512 coding upstream 260335 14467759 ~ 14478114 (+)
AMCG00008906 LOC108433193,LOC104932970 coding upstream 282649 14419818 ~ 14455800 (+)
AMCG00008908 LOC108433193 coding upstream 323714 14414349 ~ 14414735 (+)
AMCG00008921 NA coding downstream 68659 14823303 ~ 14832837 (+)
AMCG00008928 NA coding downstream 195236 14949880 ~ 14979753 (+)
AMCG00008930 NA coding downstream 278090 15032734 ~ 15045423 (+)
AMCG00008932 si:ch211-51c14.1,LOC108427330,LOC107732900,LOC107674129 coding downstream 296051 15050695 ~ 15065008 (+)
AMCG00008936 NA coding downstream 343522 15098166 ~ 15099180 (+)
G52384 NA non-coding upstream 118166 14619961 ~ 14620283 (+)
G52383 NA non-coding upstream 131756 14606482 ~ 14606693 (+)
G52382 NA non-coding upstream 139997 14597967 ~ 14598452 (+)
G52380 NA non-coding upstream 155157 14583093 ~ 14583292 (+)
G52379 LOC108440675,LOC107667363,LOC107748408,LOC107673578 non-coding upstream 160127 14578091 ~ 14578322 (+)
G52430 NA non-coding downstream 11567 14766211 ~ 14831477 (+)
G52439 chmp2a,bc2,LOC107727322,LOC107582752,LOC107552765,LOC106579304,LOC106589279 non-coding downstream 58851 14813495 ~ 14814414 (+)
G52497 NA non-coding downstream 227479 14982123 ~ 14982509 (+)
G52493 NA non-coding downstream 272074 15026718 ~ 15027582 (+)
G52580 NA non-coding downstream 369943 15124587 ~ 15125501 (+)
AMCG00008910 NA other upstream 196201 14527818 ~ 14542248 (+)
G52349 NA other upstream 255194 14481921 ~ 14483255 (+)
AMCG00008856 rps26,RPS26,LOC106567051 other upstream 1429019 13306495 ~ 13309430 (+)
G51939 NA other upstream 1480809 13253814 ~ 13257640 (+)
G51928 LOC108272117,LOC107678215,LOC107581315,LOC107713111,LOC107551923 other upstream 1513503 13222320 ~ 13224946 (+)
AMCG00008920 NA other downstream 28399 14783043 ~ 14795184 (+)
AMCG00008919 zbtb45,LOC104952775,LOC105021497,LOC101077905,LOC102207372,LOC101487628,LOC102796714,LOC100704009 other downstream 52653 14807297 ~ 14811757 (+)
AMCG00008931 pp12c,LOC106564933 other downstream 227929 14982573 ~ 15020846 (+)
AMCG00008960 rps11,rs11 other downstream 1101580 15856224 ~ 15863670 (+)
AMCG00008965 NA other downstream 1140786 15895430 ~ 15910151 (+)

Expression


Co-expression Network