AMCG00008931 (pp12c,LOC106564933)


Basic Information

Item Value
gene id AMCG00008931
gene name pp12c,LOC106564933
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 14982573 ~ 15020846 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008931
ATGGAGAGAACAAGAGAGGTGGGGTGGGAGGAGATAGGGAGAATATACAGGAAGAGAAATTCACAGCaacagaggaagagaaagagaggggaggaAAGGGGAAGAGAGGAGCTGTGCTTAGTGATGGCGGACGCGGCCAAAGTGAAACGCCGCGAGCAGCTGAAACGCTGGGCTGGCTCGAGTACAGACCGCGAGCCTCCCGTGCCGCGTCAGAGGCGGAAGGCTGGAACAAGCGAGTCCGGGGATGCGCAGGCCTTGGGGCCCACTGTCGGAGAAGATGGGTCGCCAGCGGAGGATAGCGGAAAGGCGGCGACCgggcagagagaggggcacGGGGAGGCGGAGAGAGCCGTCCGCAGGAGGAATTTCCTGTTGCAGAACGGTGCCAGTCTGGCTGCAGTGAACTGTGATGGAGATGTGCCAGTGGACATTGCAGAGGACGAGGCCACAGAGACACTGCTGACTGAGACCACACGCAGACAGGGTACCTCGACATACATGCTGGCTCTGTGTGATTGTGGGGTGGACCTCTCTGTGGGGGACAGTGATGGCTGGACGCCCCTCCACGCGGCGGCACACTGGGGACAGATGGACGCCTGCAGACTGCTGGCTGAGAGGCACTGCGACATGGAGGCACAGAGCCACTCGGGTCAGACTCCATTCGACGTGGCTGATGAGAGTGTGGAGTCTCTGTTGGAGGAGCTGGCACAGAAACAggcccagGCCCAGGAGCAGCGGGAAAGGGAGGagcgtgagagagaggagagggagagagagagggagagcaggacAGCCCGCGTGCAGCCCACCCCCCAGCGCAGGGATACACCCCCTGAGAGCCCtgcggacagacagacagacagacgcaaGTACCAGGCCCCAGTGAGAGACGAGGAGTCGGAGTCTCAGAGGAGGGCACGCTCCCGACTCATGAGACAGTCCCGCAGGTCAACACAGGGGGTGACGCTCACTGACCTGAAGGAAGCCGAGAAAACTGTGAACAAGACGACACaggaaTCTCAGCGCAGTGTACAGACAGTCAGTCCAGTCGTCACCATCACCCCtgcagagagagATGTGGACCCGGCCGCAGACGTCTCTCTGCAggatggggagagggagagaggaatcAGGCTTGGCgtgaaggagaggaggagggggaggaaggagAGGCGGTCAACCGGGCTGATCCATGGCATGCTGGGAGAGAACGAGGACAGTGATGGTGTGGACGACAGCCTCTCAGACAGCTCCAACCCTGCCAGTTGTACAGGGCAGTATTAACAGAGAATGAGAGGCTCAGGGAGCAACTGCAGGAGGCTGAGTTACTGCTGAACCAGAATAAAGTGGAGCTGGAAAGACAAAGACAGagtCATGAGAGGAGCACAGAGAGACCAGCCCTTCTGGAGCTGGAGAGATTTGAGAAGAGAGCCTTGGAGAGGAGAGCCATAGAGCTGGAGGATGAGCTCAAGGTTCTCTCTGACCTCAGGGCCGACAATCAGCGACTGAAAGATGAGAACGCAGCTCTGATCAGGGTCATCAGCAAGCTTTCCaaatagagggagagaggaataaCACATtccccctctttttctctctctctctctctctctctctctcctgttatCAGggtaatgcaaaacaatatacaggattaaaaaaaaaactacaaatcccATGATTGCCATTGGGCTCAATTGTAAGGCATGGTGGGATTTGAAGTTTGTATATTTGCcaattgtctgttttgttttttgtacttgtCTTTTTCTAATGCTGCATCTCTGTATTGCTTACCTATATAAAAGAATTGCTGGGGGGGGATTCCATTTCGCCATCATCCATCCTTTCAAAGCCAGTGTCAGGGGCATGTTGGGATatgtagtttttaattttcttttgccAATGAGAGTACTGTACTTGAAGTTATACAAAGACTACATTTCCATTCATCCCCCCTGCCAAACCCCCATCACCCCACCCTCCC
>TU65697
ggggtggaggTAAttagagacagagggagagatgaaaCAGGGTAATAAGAGATGGAGAGAACAAGAGAGGTGGGGTGGGAGGAGGTAAGTAGGAGAGAaggatggagagacagagaaagaagtgAGAACAGTAACCAATGTACTATAGTCAGTcagactccctctctctctctctccacccatTTTCTCATTATCTCCTCCTCTCTACccttccctccccacccccctgctccctctctcccactgaGTCCATCTGCTCACCTCAGTAATCTTTGCCTAAAATCACTACGTTAATCCTCTTTCCATCTGtcgagagagagggggaaggaaggagggagggaggaagagagagggttaatattGTATACAGAGTCTGATTGGCTGACGGCACTACAGTACATGAACACGGTCTGACTGGTCACTatagtacattaacactgactgactgactgactggacaatATACCACATTAACATTGACTCAGTGACTGGACACAACAGTACAATAAAATTAtacctctctctccatttctgcccccccttctctccctcactttccttttcttcctctccctcacAAGGTCACCCCCCTCTACCCCCCAGGGGAAGACACAGATAGGTAATTAAAGAAGAGATGGATGGAGGTGGAAACCTGATCCCTCCCTTCTTTactatttatgttattattattacagagaCTGTTGAGTTACAGTGATGTTTATATTACTGAATTTcttgattttgtgattttaaaaaatattgttgttgttgaaaaggTAACACTcaatttgaaagcatttttttacagCTATTGtcctaaatgtattattattattattattattattattattattattattattattattattataatcatatatatttatattgtaatgatttgatGTATATAtgcgtgtatgtgtatgtatgtatcgatcccctgctggatgaaggccttctgaaaatgtttccaCTCGCTTCTATCTaaagcttctcttttccaaatcatacctgcaaagtgtatgatttcatcttccaatACTCTATATgatcatcttctaggtctttttctAGATCTCGTGATCCttcaataacaatatttaatatttgtccACTTtttatctgttcttcttgcaacgactaattgccattttaacatgttcactcCTGACTCCTGtcaaatattttgatttgttctcagatccattcatttatttttctatatctttttgttattccatacatctttccatgctcctttgtgtcatctgcagtttctataacgtttgcattaagtgaccaggtttcacatccataagtgagcactgcattaatcaaataatcaaatttcAACCGTGTGCTGTTTCCttcaaatgcactccatcccatgtTTACTctttatttcttccataatatctccatttgcactgatttgttgtccaaggtagacataacgtTTGACTTCTTTGAGAAtttgttgatatatatatatatatatgggcatGTGCGTGTTTGAATAATGTGCaaagtatgtatatacatgtatgtaggTGTGCATGTATTGTATAAATACTAACTGTCCATATATTGTCACTGGCTTATCCCACTTAAGGAACACTGGAGTTAAGGAATGGCCACAGTGTGtagaaatgtgatgttttttgttaatgtatgtgtatatgaatTGCAATGTTGCTCCTATTTTTCATGCCAATAAAGAACAACTTtaatctgaatttgaatttaagaGTGAGAAACACCAAATGCAATTCCTTTGCATGGGACAGCTTTGAAATCCTGGAGCAACATCATGTGGCAAAGACAGGAATTACTACCAGTGAAGTAAGGGGGACACCTGGTGTCCCTTGTGAAATATTAGGAGATCAGCCTATTGTGTAAAAGACGCTGTATGACTCAGACCCCAGTTTCATTAAAGGGATGGTTCAC

Function

NR:

description
PREDICTED: phosphatase 1 regulatory subunit 12C isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008931 True 1987 mRNA 0.55 15 14982624 15020846
TU65697 False 1953 lncRNA 0.38 1 14982573 14984525

Neighbor

gene id symbol gene type direction distance location
AMCG00008928 NA coding upstream 2820 14949880 ~ 14979753 (+)
AMCG00008921 NA coding upstream 149736 14823303 ~ 14832837 (+)
AMCG00008912 NA coding upstream 332624 14632517 ~ 14649949 (+)
AMCG00008909 NA coding upstream 489994 14488533 ~ 14492579 (+)
AMCG00008905 LOC107733585,LOC107667357,LOC108433193,LOC101485512 coding upstream 504459 14467759 ~ 14478114 (+)
AMCG00008930 NA coding downstream 11888 15032734 ~ 15045423 (+)
AMCG00008932 si:ch211-51c14.1,LOC108427330,LOC107732900,LOC107674129 coding downstream 29849 15050695 ~ 15065008 (+)
AMCG00008936 NA coding downstream 77320 15098166 ~ 15099180 (+)
AMCG00008935 NA coding downstream 112490 15133336 ~ 15136021 (+)
AMCG00008941 LOC107560742,LOC106601920 coding downstream 161942 15182788 ~ 15202953 (+)
G52497 NA non-coding upstream 64 14982123 ~ 14982509 (+)
G52430 NA non-coding upstream 151096 14766211 ~ 14831477 (+)
G52439 chmp2a,bc2,LOC107727322,LOC107582752,LOC107552765,LOC106579304,LOC106589279 non-coding upstream 168159 14813495 ~ 14814414 (+)
G52384 NA non-coding upstream 362290 14619961 ~ 14620283 (+)
G52383 NA non-coding upstream 375880 14606482 ~ 14606693 (+)
G52493 NA non-coding downstream 5872 15026718 ~ 15027582 (+)
G52580 NA non-coding downstream 103741 15124587 ~ 15125501 (+)
G52614 NA non-coding downstream 204199 15225045 ~ 15225520 (+)
G52619 NA non-coding downstream 215856 15236702 ~ 15236924 (+)
G52628 NA non-coding downstream 226052 15246898 ~ 15247191 (+)
AMCG00008919 zbtb45,LOC104952775,LOC105021497,LOC101077905,LOC102207372,LOC101487628,LOC102796714,LOC100704009 other upstream 170816 14807297 ~ 14811757 (+)
AMCG00008920 NA other upstream 187389 14783043 ~ 14795184 (+)
AMCG00008917 smarcc2 other upstream 227929 14738449 ~ 14754644 (+)
AMCG00008910 NA other upstream 440325 14527818 ~ 14542248 (+)
G52349 NA other upstream 499318 14481921 ~ 14483255 (+)
AMCG00008960 rps11,rs11 other downstream 835378 15856224 ~ 15863670 (+)
AMCG00008965 NA other downstream 874584 15895430 ~ 15910151 (+)
G52942 NA other downstream 1341256 16362102 ~ 16362511 (+)
AMCG00008983 NA other downstream 1559017 16579863 ~ 16587381 (+)
G53028 NA other downstream 1651657 16672503 ~ 16673542 (+)

Expression


Co-expression Network