AMCG00008933 (syt3,LOC107732896,LOC107563990,LOC107551154)


Basic Information

Item Value
gene id AMCG00008933
gene name syt3,LOC107732896,LOC107563990,LOC107551154
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 15066924 ~ 15070781 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008933
ATGTCAGGAGACTGGGACGAGGACCTGTGCAAGAAGGCTCTGATGCTGCCCCGCAAGGATGtacactcctcctcctccctctatCCATCACTCTCCTCCTCCGTGCCACCGCAGCcacaccccctgccccccctgcAGACCCAGCAGTTCTCTGACATGCTGGTGGTGGAGAGAGTGGAACtggtggggggcgggggcgggggagggggcggACTGTCTAGCCCCGATTTCCATGGCGACGAGAAGACGGAGCAGCTGACCAGCATCGGGCAGATCAAGCCGGAACTGTACAGACTGCGGCAGGAGGGCACGGGGGACGGCAAACAGGGCAGCACCACCACCTGTGGGAAAATCAGCTTCCTGCTCAGATACGCCTAcaaCACGGAGCAGCTGGTAGTGAAGATCTTGAAGGCTCTGGATCTTCCTGCCAAAGATGCCAATGGCTTCTCTGACCCCTACGTCAAGATCTACCTTCTGCCTGACCGCAAGAAGAAGTACCAGACCAAGGTGCACAGGAAGACTCTGAACCCGGTGTTCAATGAGACATTCCAGTTTGGTGTTCCGCTGTCCGAGCTGCATTGCCGCAAGCTGCATTTCAGCGTCTATGACTTCGACCGCTTCTCACGCCACGACCTCATAGGCCAGGTGGTGGTGGACAACCTGCTGGACTACAGCGAGGGCGGGGCCGGCGACAAGCCTGTGTGGAGGGACATAGTGGAGGGGACTGCTGTGAGTGGGAGTGCGGTGGAGTggagtgtagtgtactgtgagaagGCTGACCTGGGGGAGCTCAacttctctctgtgtttcctgCCCACTGCCGGCCGCCTCACCGCCACTATCATCAAGGCCACCAACCTCAAGGCCATGGACCTCACTGGCTTTTCTGaccCCTATGTCAAGGCATCTCTGATCTGCGATGGTCGCCGGCTGAAGAAGCGAAAGACGTCGATAAAGAAGAGCACGCTGAACCCCTCCTACAACGAGGCACTGGTTTTCGACATCCCGCCGGACAGCGTCCACTCCGTCAGCCTAGTCATTGCCGTCATGGACTACGactggtga

Function

symbol description
syt3 Predicted to enable several functions, including calcium ion binding activity; phospholipid binding activity; and syntaxin binding activity. Predicted to be involved in calcium-ion regulated exocytosis; cellular response to calcium ion; and regulation of secretion by cell. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in exocytic vesicle and plasma membrane. Orthologous to human SYT3 (synaptotagmin 3).

NR:

description
PREDICTED: synaptotagmin-3

GO: NA

KEGG:

id description
K19903 SYT3; synaptotagmin-3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008933 True 1065 mRNA 0.59 7 15066924 15070781

Neighbor

gene id symbol gene type direction distance location
AMCG00008929 NA coding downstream 173697 14868827 ~ 14893227 (-)
AMCG00008922 chmp2a,bc2,LOC107552765,LOC107582752,LOC107727322,LOC106589279 coding downstream 247928 14811874 ~ 14818996 (-)
AMCG00008927 NA coding downstream 261258 14800769 ~ 14805666 (-)
AMCG00008926 NA coding downstream 269447 14796350 ~ 14797477 (-)
AMCG00008925 NA coding downstream 296494 14766956 ~ 14770430 (-)
AMCG00008939 NA coding upstream 8284 15079065 ~ 15087219 (-)
AMCG00008938 NA coding upstream 39002 15109783 ~ 15112295 (-)
AMCG00008940 NA coding upstream 65622 15136403 ~ 15152205 (-)
AMCG00008937 NA coding upstream 105835 15176616 ~ 15182566 (-)
AMCG00008942 NA coding upstream 131487 15202268 ~ 15204656 (-)
G52513 NA non-coding downstream 43796 14994916 ~ 15023128 (-)
G52518 NA non-coding downstream 60727 14994570 ~ 15006197 (-)
G52421 NA non-coding downstream 333127 14732123 ~ 14733797 (-)
G52387 NA non-coding downstream 468506 14597967 ~ 14598418 (-)
G52363 NA non-coding downstream 521174 14542556 ~ 14545750 (-)
G52594 NA non-coding upstream 98541 15169322 ~ 15172366 (-)
G52621 NA non-coding upstream 167274 15238055 ~ 15239115 (-)
G52666 NA non-coding upstream 210115 15280896 ~ 15284268 (-)
G52676 NA non-coding upstream 345164 15415945 ~ 15477937 (-)
G52683 NA non-coding upstream 356135 15426916 ~ 15428651 (-)
AMCG00008934 NA other downstream 9718 15032347 ~ 15057206 (-)
AMCG00008923 NA other downstream 200936 14840707 ~ 14865988 (-)
AMCG00008918 c1ql4b,LOC107673443,LOC107711019,LOC108440793,LOC107585204,LOC108271740,LOC107667333,LOC108432462,LOC100702077,LOC103376602 other downstream 351602 14693830 ~ 14715322 (-)
G52187 ptges3a,ptges3,LOC107745455,LOC107570321,LOC108433158 other downstream 1083031 13938451 ~ 13983893 (-)
G52099 NA other downstream 1380187 13685335 ~ 13686737 (-)
AMCG00008951 ap2a2,LOC106587467,LOC106562310 other upstream 398893 15469674 ~ 15505517 (-)
AMCG00008957 NA other upstream 533044 15603825 ~ 15639130 (-)
AMCG00008964 snrnp70,LOC107693498,LOC107729450,LOC106600692,LOC106583923 other upstream 763259 15834040 ~ 15851810 (-)
G52782 NA other upstream 766208 15836989 ~ 15837801 (-)
G52834 NA other upstream 886886 15957667 ~ 15963617 (-)

Expression


Co-expression Network