AMCG00008942


Basic Information

Item Value
gene id AMCG00008942
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 15202268 ~ 15204656 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008942
ATTCCTCAGTTTAGTTTGCTGAACCTTTGATCCCctttgacagagagagaggttagGAGTATCAGAAAGAACAAAATtcagagggtgagagagagctgTATTACTATACTGTAGTTTTAAGTTAGTCAGTCAgtagagagacagtgagaggaACAGATTACACTGAGTTTCATCCTACAGTGAATCCTATGGCTAACACAGAGACAGTGATTGCAGTTGGAATTGTGGGATTCGGACACTTAGgAGAATATCTGGCAGAGAGGATACAGAGGGAAGGGGCGTCTGCTGGACTTCAGTTGGCATTCGTGTGGAACAGGAGCaaggagagactgagggagaaACTTCACTCCGACCTCATCCTCGATGACCTCACAGAGTTCACACAGAGGGGTGCTGACCTGATTGTGGAGGTATGTCACCCCGACATTGTGAGAGACTTTGGAGAGAGGTTCCTCTGCCACGCCCACTTCCTGGTTGGCTCTCCATCCTCCCTCTCTGACTCTACTCTCGAGGGTCGACTCCGCTGCACCGCAGAACTTCACGGGAAGACGCTGTATGTGCCAAGTGGTGCATTATGGGGAGGAGTGGACATTCAGAGACTGAGCGAGAGAGGAGGACTGAAGtcTCTGCTGGTCCGCATGTCTAAGCACCCCTCCTGTTTCCGTTTGGCCCCACCCCTGCACCACGATTGGTCAGAGGGCGAGGGCAGGCATGTCCTGTTCTCGGGGCCAGTGCATGACCTTTGCCCTCTGGCCCCCAACAATGTCAACACCATGGCTGCCGCTGCCCTGGCCGCTCCTGATCTGGGCTTCAGTGGAGTGACTGGAGAGATAGTGTCTGATACAGAGCTCAGTCAGTATCACATAGTGGAGGTGGAGGTAACTGGTCATGATGGTTTCACTGTGACGACCATGAGACGCAACCCCGCCCAACTGGGAGCTGTTACTGGGAGTGCAACTTACCAATCCTTCTGGAGCAGCATACTTGGTCCGTACGGTAGTTTTGTAAAGGACACGGTGGAAGAGTCTTCTTGTGCTGAAGAAAAACTGACTGAGAAtgacacactgacgcactga

Function

GO:

id name namespace
GO:0006742 NADP catabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0009435 NAD biosynthetic process biological_process
GO:0050661 NADP binding molecular_function
GO:0033735 aspartate dehydrogenase activity molecular_function

KEGG:

id description
K06989 nadX, ASPDH; aspartate dehydrogenase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008942 True 1076 mRNA 0.52 7 15202268 15204656

Neighbor

gene id symbol gene type direction distance location
AMCG00008937 NA coding downstream 19702 15176616 ~ 15182566 (-)
AMCG00008940 NA coding downstream 50063 15136403 ~ 15152205 (-)
AMCG00008938 NA coding downstream 89973 15109783 ~ 15112295 (-)
AMCG00008939 NA coding downstream 115049 15079065 ~ 15087219 (-)
AMCG00008933 syt3,LOC107732896,LOC107563990,LOC107551154 coding downstream 131487 15066924 ~ 15070781 (-)
AMCG00008943 NA coding upstream 97186 15301842 ~ 15328145 (-)
AMCG00008944 NA coding upstream 167889 15372545 ~ 15391050 (-)
AMCG00008945 NA coding upstream 194923 15399579 ~ 15400121 (-)
AMCG00008950 NA coding upstream 309978 15514634 ~ 15528761 (-)
AMCG00008956 NA coding upstream 337806 15542462 ~ 15596322 (-)
G52594 NA non-coding downstream 29902 15169322 ~ 15172366 (-)
G52513 NA non-coding downstream 179140 14994916 ~ 15023128 (-)
G52518 NA non-coding downstream 196071 14994570 ~ 15006197 (-)
G52421 NA non-coding downstream 468471 14732123 ~ 14733797 (-)
G52387 NA non-coding downstream 603850 14597967 ~ 14598418 (-)
G52621 NA non-coding upstream 33399 15238055 ~ 15239115 (-)
G52666 NA non-coding upstream 76240 15280896 ~ 15284268 (-)
G52676 NA non-coding upstream 211289 15415945 ~ 15477937 (-)
G52683 NA non-coding upstream 222260 15426916 ~ 15428651 (-)
G52692 prmt1,LOC107729532,LOC107658485 non-coding upstream 302592 15507248 ~ 15513223 (-)
AMCG00008934 NA other downstream 145062 15032347 ~ 15057206 (-)
AMCG00008923 NA other downstream 336280 14840707 ~ 14865988 (-)
AMCG00008918 c1ql4b,LOC107673443,LOC107711019,LOC108440793,LOC107585204,LOC108271740,LOC107667333,LOC108432462,LOC100702077,LOC103376602 other downstream 486946 14693830 ~ 14715322 (-)
G52187 ptges3a,ptges3,LOC107745455,LOC107570321,LOC108433158 other downstream 1218375 13938451 ~ 13983893 (-)
G52099 NA other downstream 1515531 13685335 ~ 13686737 (-)
AMCG00008951 ap2a2,LOC106587467,LOC106562310 other upstream 265018 15469674 ~ 15505517 (-)
AMCG00008957 NA other upstream 399169 15603825 ~ 15639130 (-)
AMCG00008964 snrnp70,LOC107693498,LOC107729450,LOC106600692,LOC106583923 other upstream 629384 15834040 ~ 15851810 (-)
G52782 NA other upstream 632333 15836989 ~ 15837801 (-)
G52834 NA other upstream 753011 15957667 ~ 15963617 (-)

Expression


Co-expression Network