AMCG00008946


Basic Information

Item Value
gene id AMCG00008946
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 15507310 ~ 15513137 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008946
ATGGCGGAGAGCTCTGGTATGGAGGATTACTACTTTGACTCCTACGCCCACTTCGGCATTCATGAGGAGATGCTGAAAGATGAGGTGCGTACACTGACCTACAGGAACTCTATGTTCCACAACAAGCATCTGTTCCGGGACCGTGTGGTGCTGGACGTGGGCAGTGGCACCGGCATCCTGTGCATGTTTGCTGCAAAGGCGGGTGCCAAGAAGGTCATCGGGGTCAGTGTCAAGTCTGTTCATGTGTCAAGTCTGTGCGTGGCTGGAGCCAAGAATGTCATTAGATTGAGTGCTCCAGCATCTCTGATTACGCGGTCAAGATTGTTAAAGCCAACAAACTGGACCACAAAGGTGGATATCATCATCTCCGAGTGGATGGGCTACTGCCTCTTCTACGAGTCCATGCTCAATACGGTCATCTACGCAAGGGACAAGTGgctgAAACCAGATGGGTTGATATTTCCTGACAGAGCCACTTTGTACGTCACTGCCATTGAGGACCGCCAGTATAAAGACTACAAGATCCACTGGTGGGAGAATGTCTATGGGTTTGACATGTCCTGCATTAAGGACGTAGCCATCAAGGAGCCTCTAGTAGATGTGGTGGACCCCAAACAGCTGGTGTCTTCGGCATGTCTCATCAAGGAGGTGGATATCTACACAGTGAAGATTGAGGACCTGTCCTTCACCTCGCCCTTCTGCCTGCAGGTGAAGAGGAACGACTACATCCACGCGCTCGTCACCTACTTCAACATTGAGTTCACACGCTGCCACAAGAGGACCGGCTTCTCAACCAGTCAGTGCACCTTGctctgtACGGGCGAGGAGATATTTGGAACGATCAGCATGAAGCCCAATGTCAAGAACAACcgTGATCTGGACTTCAATGTGGACATTGACTTCAAGGGACAGCTGTGCGAGGTGTCGAAGACATCAGAGTACAGGATGCGCTAGAGGAAGAGGAGGGTGCAGGAGACCTGGCCgaggggaggaggagagcaaACTGCACACAAGAATTGAATAGAGAGATGTACACTCAAACTAGATGCATGGAGAGGTGGAATAATGGTtacagagggagggggaggagagatgCATGTGGGCTGGAGGAGTAGAggagcaatatatatataatttttttttgtccttttattTGTGTGCCCCTCTCGTCTGTGTTAGTATCAAAGAATTTGGATCCATCGAGTTCCAAGTCTCCGCAGCTCCCTAGctgcccccacctcccccccacacattATTGTGCACAATTTCCCAGAATGCAATTTCTCATCTCGTCTAGTCAGAATcgtattataattaattttggtGTATAAGCTGTAGCTTTTTAAGACCTTGGTATTTGCGCCACACACCgacagacacacaaatggaGACGCACTAATGCTTGCTACCAGTCATACATACACCTGCAGATTCGCACACCAATCTCGTGTTATACACCCCACAATGACCATATCAGTATGCCAGCTGTGTGCCTGGTTACCTTCCACCACACTTTGGAGAATTTGAGAATTAGTGTGTGGGTTGGTCAGTTACTGGCTCTATTGACCACAGCACTGTCCCCTGCCAGGGCCTGCAGTTGGGGTCACCAGATGACCGTGATCTCATAGTTCAGCTGTTCACAACAAGCACTCTGGTCGCCTTAGTACTACTATAGTGTGTGTAGTTAATTTTTggtttcccccctccccctgtagaataatttgaaatgatcaaatgtttaaatttgcAAGAGGAAGTCCTACAGTACTTACTCACTGTACAATAACTCCTTTTTACCAGTCTGTGAGTAGAGTCAGCGTTTTATATTGTAGTGGGGTTTGTCAGTCTCTCCCCCTCTGCCCTCTTCCCTAATTTATtatggagggaggggggggagagtggagagggagaagggaagaG

Function

GO:

id name namespace
GO:0043985 histone H4-R3 methylation biological_process
GO:0060027 convergent extension involved in gastrulation biological_process
GO:0016273 arginine N-methyltransferase activity molecular_function

KEGG:

id description
K11434 PRMT1; type I protein arginine methyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008946 True 1920 mRNA 0.49 10 15507310 15513137

Neighbor

gene id symbol gene type direction distance location
AMCG00008947 LOC107554102,LOC107730730 coding upstream 13182 15493728 ~ 15494128 (+)
AMCG00008941 LOC107560742,LOC106601920 coding upstream 304357 15182788 ~ 15202953 (+)
AMCG00008935 NA coding upstream 371289 15133336 ~ 15136021 (+)
AMCG00008936 NA coding upstream 408130 15098166 ~ 15099180 (+)
AMCG00008932 si:ch211-51c14.1,LOC108427330,LOC107732900,LOC107674129 coding upstream 442302 15050695 ~ 15065008 (+)
AMCG00008948 NA coding downstream 5044 15518181 ~ 15519179 (+)
AMCG00008949 NA coding downstream 6492 15519629 ~ 15522296 (+)
AMCG00008955 NA coding downstream 86194 15599331 ~ 15608308 (+)
AMCG00008953 NA coding downstream 109681 15622818 ~ 15623403 (+)
AMCG00008952 syt1 coding downstream 120586 15633723 ~ 15640935 (+)
G52651 NA non-coding upstream 75709 15412001 ~ 15431601 (+)
G52632 NA non-coding upstream 223765 15282700 ~ 15283545 (+)
G52628 NA non-coding upstream 260119 15246898 ~ 15247191 (+)
G52619 NA non-coding upstream 270386 15236702 ~ 15236924 (+)
G52614 NA non-coding upstream 281790 15225045 ~ 15225520 (+)
G52691 NA non-coding downstream 398 15513535 ~ 15514018 (+)
G52717 NA non-coding downstream 114703 15627840 ~ 15703015 (+)
G52766 NA non-coding downstream 250800 15763937 ~ 15764143 (+)
G52781 NA non-coding downstream 323848 15836985 ~ 15837809 (+)
G52798 NA non-coding downstream 366920 15880057 ~ 15895419 (+)
AMCG00008931 pp12c,LOC106564933 other upstream 486464 14982573 ~ 15020846 (+)
AMCG00008919 zbtb45,LOC104952775,LOC105021497,LOC101077905,LOC102207372,LOC101487628,LOC102796714,LOC100704009 other upstream 695553 14807297 ~ 14811757 (+)
AMCG00008920 NA other upstream 712126 14783043 ~ 14795184 (+)
AMCG00008917 smarcc2 other upstream 752666 14738449 ~ 14754644 (+)
AMCG00008910 NA other upstream 965062 14527818 ~ 14542248 (+)
AMCG00008960 rps11,rs11 other downstream 343087 15856224 ~ 15863670 (+)
AMCG00008965 NA other downstream 382293 15895430 ~ 15910151 (+)
G52942 NA other downstream 848965 16362102 ~ 16362511 (+)
AMCG00008983 NA other downstream 1066726 16579863 ~ 16587381 (+)
G53028 NA other downstream 1159366 16672503 ~ 16673542 (+)

Expression


Co-expression Network