AMCG00008952 (syt1)


Basic Information

Item Value
gene id AMCG00008952
gene name syt1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 15633723 ~ 15640935 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008952
ATTAGGTGAAGACTCTCTGCAATGCGATTGGTTAGCTCCCGGAAAGTGAGGGCGATGGCAAGGCGTTCGGTAGAGGCCCCGCCCCAAGACACCGAGCACGTTAACAATGAGACAAGTACCCcgcttcacacacacaaagaccaCTTCAGCAGCATGAAGAACAAGTTCATGAACGAGCTGGGGAGACTGCCCATGATGGTGCTGTGTGTCCTGGTGGTCTGCTGCGTGCTCTGCGTGCTGAAGAAGTGCTGTGCTAAGAAGAAGAAGGGCAAGAAAGCGAGGGATAAGAAGAAAGAGATGAACAagaagaaggagggagaggaggggaccAACAGTACAGAGAAGGCGATGGACATGGGGGGCACCTCTGACCCCTACGTCAAGGTTTACCTGCTGCCTGACAAGAAGAAGAAGTTCGAGACCAAAACCCTGGTGATGGCCGTCTTCGACTTCGACCGCTTCTCCAAACATGACACCATTGGAGAGATCAAGCTGCCCATGAGCAGCCTGGACCTGGGGCAGCCCATACAGGACAAGAAAAGCTGGAATGGGAAGCGactcaagaagaagaagacgacAATTAAGAAGAACACACTGAACCCCTATTACAATGAGAGCTTCAGCTTCGAAGTCCCTTTCGAACAGATACAGaagGTGCAGGTGGCAGTGACAGTGCTGGACTATGACAAGCTGGGGAAGAACGATGCCATAGGAAAGGTGTTTGTGGGCTGTGGCTCCTCGGGGACGCAGCTCCGCCATTGGTCAGACATGCTGGCCAATCCGCGGCGGCCAATTGCGCAGTGGCACACATTGCAACCTGAGGAAGACATCGACTCCATCCTGCAGGGCAACCCCCGCTGACCTCGCTCTCTACCCTCCACTGACCTCACATCCTGTCCCCTTAACATCACTTCCTGACTGGTGCTGACTTCACTTTCTGTTCTCCTGACATCACTTCGTGCCCGGCACTGACCTCACTTCCTGTCCCCTTACATTAACAACTCATCCTTCCCCCTTCGTGCTGACCTCATTTCCTACACTCCACTGACATCACTTCCTGCCTGTCAGTCAACTTTCCCCACTTtccatctgtctgtgttttttaaaaatacttccaTATAGCATCAGTATAAAATCACCTTTAACCCACTACAGTGCTGATGTCACTTCCTGACTGCCACCTTTAAGGGGATGTCTCATTGAATTTACTTCCTATAAGCAGCCCTTTGTGTGGCAGTGGTTTTATTCTGATttttgttgtgtgctgtgtagctgtgtgtgtttctgtacacTCCCAGGCTGTGTACTCTGTGTTGGTGCTGccccattctctctccctctctcacaatGCAGTTATAAGCACTGTGATGTTGTATAATCCATTGATCTGTATTAAAATACAGGAGAAGCATTTCAGTAGGGGGACACATATAGAgtgttggagagagagagagagagagagagagagagagagagagagagagagagagaagagggtgTCAGACCCTGAGTATTAAACAGAACTGGACTGGAGAGAGGGAATGAGatggaggaagggagaggggaaggggagagagagggagatcaGAGAgattttgtgtctgtctgtaaacTGATCAGTATGCTAGACTATTAAACTGAC

Function

symbol description
syt1 Enables low-density lipoprotein particle receptor binding activity. Involved in positive regulation of dendrite extension. Located in cytoplasm.

NR:

description
PREDICTED: synaptotagmin-1 isoform X2

GO:

id name namespace
GO:0006810 transport biological_process
GO:0008021 synaptic vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008952 True 1642 mRNA 0.50 7 15633723 15640935

Neighbor

gene id symbol gene type direction distance location
AMCG00008953 NA coding upstream 10320 15622818 ~ 15623403 (+)
AMCG00008955 NA coding upstream 25415 15599331 ~ 15608308 (+)
AMCG00008949 NA coding upstream 111427 15519629 ~ 15522296 (+)
AMCG00008948 NA coding upstream 114544 15518181 ~ 15519179 (+)
AMCG00008946 NA coding upstream 120586 15507310 ~ 15513137 (+)
AMCG00008954 NA coding downstream 756 15641691 ~ 15650273 (+)
AMCG00008967 NA coding downstream 290381 15931316 ~ 15931979 (+)
AMCG00008966 NA coding downstream 302222 15943157 ~ 15951025 (+)
AMCG00008970 NA coding downstream 351178 15992113 ~ 15992550 (+)
AMCG00008969 ppfia3,LOC101073574,LOC105926717,LOC101158391,LOC104920703,LOC103358375 coding downstream 411614 16052549 ~ 16054525 (+)
G52691 NA non-coding upstream 119705 15513535 ~ 15514018 (+)
G52651 NA non-coding upstream 202122 15412001 ~ 15431601 (+)
G52632 NA non-coding upstream 350178 15282700 ~ 15283545 (+)
G52628 NA non-coding upstream 386532 15246898 ~ 15247191 (+)
G52619 NA non-coding upstream 396799 15236702 ~ 15236924 (+)
G52766 NA non-coding downstream 123002 15763937 ~ 15764143 (+)
G52781 NA non-coding downstream 196050 15836985 ~ 15837809 (+)
G52798 NA non-coding downstream 239122 15880057 ~ 15895419 (+)
G52817 NA non-coding downstream 312113 15953048 ~ 15955372 (+)
G52856 NA non-coding downstream 420905 16061840 ~ 16063714 (+)
AMCG00008931 pp12c,LOC106564933 other upstream 612877 14982573 ~ 15020846 (+)
AMCG00008919 zbtb45,LOC104952775,LOC105021497,LOC101077905,LOC102207372,LOC101487628,LOC102796714,LOC100704009 other upstream 821966 14807297 ~ 14811757 (+)
AMCG00008920 NA other upstream 838539 14783043 ~ 14795184 (+)
AMCG00008917 smarcc2 other upstream 879079 14738449 ~ 14754644 (+)
AMCG00008910 NA other upstream 1091475 14527818 ~ 14542248 (+)
AMCG00008960 rps11,rs11 other downstream 215289 15856224 ~ 15863670 (+)
AMCG00008965 NA other downstream 254495 15895430 ~ 15910151 (+)
G52942 NA other downstream 721167 16362102 ~ 16362511 (+)
AMCG00008983 NA other downstream 938928 16579863 ~ 16587381 (+)
G53028 NA other downstream 1031568 16672503 ~ 16673542 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location