AMCG00008954


Basic Information

Item Value
gene id AMCG00008954
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 15641691 ~ 15650273 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008954
ATGCCTCCTGCGTCAGTCTCCAAGATCAACGGAAACGACACCCTAAAGCCTTTAGCGGTTGCCAAGCAACAGGCAAACGAAGAGGCGTGCGCAAAGTATTTCAGTGCTCGACACAtgtgtgggCCTGCCAGGCATCAGGGGGAGGCCCGGCTGCGGGGGCACCTGGGCAGCAGGTTCGACTCTCGGCTTGGATCCTTCGACTGGGATCTGAGGATGAAGCTGCACGACAGAGGGAGCTGTTGTGTGTGGACAGGGTACATTTTAGACCTCTCTTGTGAGCAACAGCAGGGATTCACCAACAGTGTGATTGACAGGGCCAAGGAAGCAGGGTTTGAGCCAGTGGACGGGAGCAGTGATGTCTTTGCCCACTTCCAGCTCCACAACCCTTCACCCGCAacctctgacccctgacctttTAGCAGGGAGTGAAGAGTAGCTATTTGTTTGGCATGGGGGGGCTCTCCCTCAATTTTTCTCTGAATTTCCCTGtacctctctcactctctacTTCCTCCTCTCCTTTCTCATCCCCACCACTCCCCAATCCCtccccagtgtgtcagtgcacagtcattgagagacagagactaTCTTCATTGTTCAACTCTAACATTTATCATCTTTATTGTTGTCACTACAGAGACAGatgaagagagggagggagagggggctaTGGgaaatagagagagggaggaggagaaaggaTTGTGTCATTAAAGGCCGTCTTCAAAATGGAAAGCAGAATCAAAACTATTGTCATCTTTTTAACCCCCCATCTGTCacttcttttctttcatttttctattctttcatttcttctttACTTCCAGCGCCCCCCCACCTTCCCCTTGCCTGCACCCTTCTTGCTGTTGGCAGAAATGggagaatgagagagggagggagagatcaGGTTAGAGCAACTGTGTGTAAAGACACATGAAACagtgtacagacacacacacacagacatacattcacacattttaCTCACAATTTCTGGGCGTGACAGATTCGGTTTAAGAGAACGTTGATCTGTAAAGAGACAGAGTGTTATTATGGACTGCTGTCATTATGGaaagattgttattattattattaatagtgtGTTTTACTGTTGTGTCAATAAAGCTACTTTGAACTACATGAAACTGAAATgctcacactgactgactgaacccAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008954 True 1181 mRNA 0.48 5 15641691 15650273

Neighbor

gene id symbol gene type direction distance location
AMCG00008952 syt1 coding upstream 756 15633723 ~ 15640935 (+)
AMCG00008953 NA coding upstream 18288 15622818 ~ 15623403 (+)
AMCG00008955 NA coding upstream 33383 15599331 ~ 15608308 (+)
AMCG00008949 NA coding upstream 119395 15519629 ~ 15522296 (+)
AMCG00008948 NA coding upstream 122512 15518181 ~ 15519179 (+)
AMCG00008967 NA coding downstream 281043 15931316 ~ 15931979 (+)
AMCG00008966 NA coding downstream 292884 15943157 ~ 15951025 (+)
AMCG00008970 NA coding downstream 341840 15992113 ~ 15992550 (+)
AMCG00008969 ppfia3,LOC101073574,LOC105926717,LOC101158391,LOC104920703,LOC103358375 coding downstream 402276 16052549 ~ 16054525 (+)
AMCG00008972 NA coding downstream 475868 16126141 ~ 16134060 (+)
G52691 NA non-coding upstream 127673 15513535 ~ 15514018 (+)
G52651 NA non-coding upstream 210090 15412001 ~ 15431601 (+)
G52632 NA non-coding upstream 358146 15282700 ~ 15283545 (+)
G52628 NA non-coding upstream 394500 15246898 ~ 15247191 (+)
G52619 NA non-coding upstream 404767 15236702 ~ 15236924 (+)
G52766 NA non-coding downstream 113664 15763937 ~ 15764143 (+)
G52781 NA non-coding downstream 186712 15836985 ~ 15837809 (+)
G52798 NA non-coding downstream 229784 15880057 ~ 15895419 (+)
G52817 NA non-coding downstream 302775 15953048 ~ 15955372 (+)
G52856 NA non-coding downstream 411567 16061840 ~ 16063714 (+)
AMCG00008931 pp12c,LOC106564933 other upstream 620845 14982573 ~ 15020846 (+)
AMCG00008919 zbtb45,LOC104952775,LOC105021497,LOC101077905,LOC102207372,LOC101487628,LOC102796714,LOC100704009 other upstream 829934 14807297 ~ 14811757 (+)
AMCG00008920 NA other upstream 846507 14783043 ~ 14795184 (+)
AMCG00008917 smarcc2 other upstream 887047 14738449 ~ 14754644 (+)
AMCG00008910 NA other upstream 1099443 14527818 ~ 14542248 (+)
AMCG00008960 rps11,rs11 other downstream 205951 15856224 ~ 15863670 (+)
AMCG00008965 NA other downstream 245157 15895430 ~ 15910151 (+)
G52942 NA other downstream 711829 16362102 ~ 16362511 (+)
AMCG00008983 NA other downstream 929590 16579863 ~ 16587381 (+)
G53028 NA other downstream 1022230 16672503 ~ 16673542 (+)

Expression


Co-expression Network