AMCG00008955


Basic Information

Item Value
gene id AMCG00008955
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 15599331 ~ 15608308 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008955
ATGAGGGCTCACTATTTCGCCAGGGATGATGTGGCCCTGCATGGGTTCTCGCACTTCTTCAAGGAGAACagtgaggaggagagggagcaTGCTGAGAAGCTGCTGTCCTTCCAGAACAAGAGGGGGGGGCGAGTGGTGCTGCAGGACGTCAAGATGTGTGACTTCCTGGAGACCCATTACCTGAACGAGCAGGTGGAGGCCATCAAGAAGCTTGGTGATCATGTGACCAACCTGACCCGCATGAGCACCCCCAGCAACGGGCTGGCTGAGTACCTGTTCGACAAGCACACGCTGGGGGGCAGCAGCTAAATGCAGCCTGTGGATCTGCCCAGGGCCTCCAGAGAGACTGACACTCCCCAGCCTCTTCCCCTGAGTTGCAGCGCTGTTTTGTGTAGTTTGTCATTGTGTGTGAGGGAATTGTTATGCATTAATACAGATTGGGTGAGGTGAAATTCAGTGATTCTAGTACTCAAACACCCAGATTGAAGATAACTGACACAGACTAACCAAGGTAACTGACCAACACTTGCATGCTGACCAGCCATGGTAACTAACTCTTATAAATGGAAAGCAAAAAAAGAGATGCATGCACTCACAAACTAATCAGTATAATCTGTAAATGAGGCACACTGACTCCCACTCACAAATGGAATGGAAGGAGACACAAACTGCAACACGGCACAAACATGCTGGACTCCTTAACAcgatctttctttttctcaatCTGGGGCTcttgtcagtctctctctctccctcacctgtTTTCCTGGCAGAGTCTGGAAGTATGTCTGTACCAAATGAATAAACTAATGCTTTGCAGCAGACTGGTGTGATGTCTCCTACTGATTCGTAGGATGTCTTCTGATGCAATGTTTATAAGGAGTTGGGGTGGTGGGAGATCATGCTAACTCATATTTTGCAGGGTGATATAACACAATGTCTATAATTAATGTGTGGTGTGACTTGGTTTATAATGTGGTGTGTAGTAGGAATGGTGTGATGTAAGAGTGGTATGTAGGTGGTGTGGTGCAATGCTTTAAAGATAAGTAGTGCaatagtttatatataatgGAGTACTGATGGATGTGGTGTGAACTATAATACATAATCAGAATATAAGTCAAGCTGTGCAGTTCTTACAGCACTGTAGAGTTCAAGGGGTATGAATCCTGCTCTACGATGTGTGCTTGCATTACCAGGCAGCAGCTTCTGCTGTATTATACTGGATTTAAGCTTTTTGTACTGAAGGTTGTTTGCCCAGTTGCTCATCCAAACGGAGGCTTCCTACTGATTAATAGCTAATTTCATGGTCGATTTAATAAATTTATCATGTTGGCCTAGTAGCTACTTCAActatgtataaaaaaacaattctgaatGTTTGGCTGTTTGGTGACAAACCTCTTATGTTCTCTATAATCTTCTCTGTGCAACATTGTGGGGGACAAAATCTCTGTGTGCAGCCGTGCTCCAATGTCTTGCGCAATGTCTCCAAATCAATCACTCACACACTGGGTTTGCTAAATGCATGCATCTACCACCGGAGCCCAACCTTGAATTAAGTAAAATGTAGCTGAAAGTCAGTGATATGGATCGCTGTGTGTTGTCTAGACAAGCTTGAAACCGCAAAATACAGATTTTGGATTGTTCTTGACCCAAAATAACTGAAGACGTCAACATTTATTCTTTGCACGtttcttttttgatttattgattagaattgcaaaatgtttgtgaaaataCTCATGCACTATAGAAACATGCACTTCTTCAACGCAAACAGTGGCTATGgatttgccttaaaaaaaaaaaaaaaaagttttgtaag

Function

GO: NA

KEGG:

id description
ko02010 ABC transporters
ko04976 Bile secretion
ko04974 Protein digestion and absorption
ko04975 Fat digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008955 True 1828 mRNA 0.43 3 15599331 15608308

Neighbor

gene id symbol gene type direction distance location
AMCG00008949 NA coding upstream 77035 15519629 ~ 15522296 (+)
AMCG00008948 NA coding upstream 80152 15518181 ~ 15519179 (+)
AMCG00008946 NA coding upstream 86194 15507310 ~ 15513137 (+)
AMCG00008947 LOC107554102,LOC107730730 coding upstream 105203 15493728 ~ 15494128 (+)
AMCG00008941 LOC107560742,LOC106601920 coding upstream 396378 15182788 ~ 15202953 (+)
AMCG00008953 NA coding downstream 14510 15622818 ~ 15623403 (+)
AMCG00008952 syt1 coding downstream 25415 15633723 ~ 15640935 (+)
AMCG00008954 NA coding downstream 33383 15641691 ~ 15650273 (+)
AMCG00008967 NA coding downstream 323008 15931316 ~ 15931979 (+)
AMCG00008966 NA coding downstream 334849 15943157 ~ 15951025 (+)
G52691 NA non-coding upstream 85313 15513535 ~ 15514018 (+)
G52651 NA non-coding upstream 167730 15412001 ~ 15431601 (+)
G52632 NA non-coding upstream 315786 15282700 ~ 15283545 (+)
G52628 NA non-coding upstream 352140 15246898 ~ 15247191 (+)
G52619 NA non-coding upstream 362407 15236702 ~ 15236924 (+)
G52717 NA non-coding downstream 19532 15627840 ~ 15703015 (+)
G52766 NA non-coding downstream 155629 15763937 ~ 15764143 (+)
G52781 NA non-coding downstream 228677 15836985 ~ 15837809 (+)
G52798 NA non-coding downstream 271749 15880057 ~ 15895419 (+)
G52817 NA non-coding downstream 344740 15953048 ~ 15955372 (+)
AMCG00008931 pp12c,LOC106564933 other upstream 578485 14982573 ~ 15020846 (+)
AMCG00008919 zbtb45,LOC104952775,LOC105021497,LOC101077905,LOC102207372,LOC101487628,LOC102796714,LOC100704009 other upstream 787574 14807297 ~ 14811757 (+)
AMCG00008920 NA other upstream 804147 14783043 ~ 14795184 (+)
AMCG00008917 smarcc2 other upstream 844687 14738449 ~ 14754644 (+)
AMCG00008910 NA other upstream 1057083 14527818 ~ 14542248 (+)
AMCG00008960 rps11,rs11 other downstream 247916 15856224 ~ 15863670 (+)
AMCG00008965 NA other downstream 287122 15895430 ~ 15910151 (+)
G52942 NA other downstream 753794 16362102 ~ 16362511 (+)
AMCG00008983 NA other downstream 971555 16579863 ~ 16587381 (+)
G53028 NA other downstream 1064195 16672503 ~ 16673542 (+)

Expression


Co-expression Network