AMCG00008957


Basic Information

Item Value
gene id AMCG00008957
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 15603825 ~ 15639130 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008957
atggaggtgggggggattgaggatggagggagggagagagatggagaggaggagagaaaagagggaaagagggggGCTCCCGCTGCGTCGTTCGTTTGTCCCCCTTGCTCGCTCACATCTGACGGGTCAAACCGGCCGAAGTCGGACAGAAAACCGCACCACGTCCCGCTGCCTGTCCAAGTACTCAGCCAGCCCATTGCTGGGGGCACCCATGCGGCTCAGGTTTGTCATGTGATCGCCAAGCTTCTTGATGGCCTCCACCTGCTCGTTCAGTTATCTTCAATCTGGGTGTTTGAGTACTAG
>TU66004
gccagactgatgtAGATCAcgtcatttagcaagaggcaaatggaggggcatcgtattcattaagagcatgtgatgtcccagtttatgtgtAGGTaagaaactcacacacacatacatacatgcacattatatatatgcacagtcacctacaaaattactggcgccattgataaagatgcgaataaaggctgtatgaaataaacacatgtaatatgtagaaagcgattgtccacaacttttattaaaagcatgctttgtttataattaaattccatgtAGCTGCTCCGCTCAGTCTGGGTCAGTCAGTGCTGAAGTCAGATGTGTTGCACAGTGACtagaccagcccaccctgatcactgattgggttaggaagaaccgtcactcaaaacctgctggaccaatggagacccaggatccacgcgTCCTTGTAAATCCCGCCACAGAATTTCACCCACCCAATCTGTATGAATGCATTACAATTCCCTCACACACAATTATAAACTACACAAGAACAGGGCTGCAACTCAGGGGAAGAGGCTGGGGAGTGTCAGTCTCTCTGGAAGCCCTAGGTGGACCCCCAGGCTGGGTTTAGCTGCTGCCCCCCAGTGTGTCCTTGTCAAACAGGTACTCAGCCAGCCCATTGCTGGGGGCACCCATGCGGCTCAGGTTGGTCACATGATCACCAAGCTTCTTGATGGCCTCCACCTGCTCGTTCAGGTAATGGGTCTCCAGGAAGTCACACATGAGGGTCGGTCTTCTCAGAGGCTAACTTGTGCAGGTCAAGCAGGGCCTGGTTGACTTTCTTCTCCAGCTGCAGGGCAATCTGCATGGCCTCCAGCCCACTGCCCCACTCGTCCCGCTCAGGCTTCTGCAGAGGGAAAACAAGCAGGTCAATACAGACAGTACAGCACATTAGCACTGACTGAATGTTTTACATGAACAGACTGGACACTGAACACCACAGaggggacacacacagaccaccCCCACACACCTTGACGTCCTGCAGCACCACTCGCCCCCCCCTCTTGTTCTGGAAGGACAGCAGCTTCTCAGCAtgctccctctcctcctcactGTTCTCCTTGAAGAAGTGCGAGAACCCATGCAGGGCCACATCATCCCTGGCGAAATAGTGAGCCTggggacaaagagagagagcgtCAATACAGTACATCAGTGACCATACAGAAGAGATGGGTTAATACTCCTGTAGGGAGTTAATATCTATACAAACTAATGTAGTGaataatacattgataaaaATTGCTTTAACCCTTTGAGTAAGAACTTATGTTCCAAGTGAGGTGGTCCTCAGGGAGAATTTATGTACCAGTATGGTCGGAAAAGTCATacaaagagaggagagaaaaaaatatatatatattaataataatgcaagaaTTTTATGAGCATAGGTCAATATCTGTTTTCTGATCACCTGATCTCGGTTTTGCCAATAGGGAGGGTTATTTAagtatattaaaagaaaaaaaaaagtcaattaaaatgtatactggTGCCGTGTTCCCAGCGATTCTAAACAAATAGCCTATACCTGGTAACCATTAATTTGATCTAcgtttttaatgcattaaaatttaaaaagatttgGATGTCAGTGAAGACAAAGATTTAAGGAGAAGGGTGAAGTGCGACTCTAAAGAGAGGGAGATGCCTCAGGATAAGGCTGAAGGGACCAAGAAACACAAACTtaagatataaaacaaaatatacatgaaaaacGACAGATGGATCTGTCCAACTACGTGCATATCAATCATTCTTTGTGTAATTATGTCATGCGTTACATGTAGtcgttttcatttaaatgcttcgcttctctttttgttttgctacttCCTGGACATTGTAACTGTAATAGGACTGTACAATGAACAATGAGATTCGACCTGTATTTTTCAACGTTAAAAAGACTCGTATTAATACGGACCATGTACGAGTCTTCAACCACTGGTCTTTCAATGTGTGcttgacaaacaaaaaaaaacaaaaaaatgcaattggTCACGGAGGCAGCCTAGTAAGGAGCAGCATGATGGAGAGCTACTTgtatgggttttattttatagccTATGCATTGTACAAATCCATTGACACATTTCACACTCTTCTCGCAATTCTATTTAATTGTAAAAGGGTTTTCGGTATGGAGTGTAAAACGGACGTGTACTAGTGTGTATTTCAGCAATACTACGATGACAGTGTATTTTTTGACTTTGGACTCAAAACTGCGACATGGGTCCACCCAGTACGGTCCCGTAAAGTTCGGCTCCGCTATTAGATCAGCCAATATCGTAAGGCGCTATATGACGTAGACAGGTTTAATTAAAGTGAATGTTCATTATGTTATTTGCCGCCTTTATTTATAAGTGCGCAATTGTAACGCAGTTTGGATTGTAATACGAGCAGCTTACCGTCGGTAGCTGCTGTAACTAGCGATATGCTGTTCTGGCCGAAATAAGTTGTATGTTACTCTACAAATCATCTATTACAAAGATTAATTTCAGTTGGTTTTATGAAGATAACAGAGCATCAAATATAGCCAATGGATTTGAGACACAGTGATGTAAAACTGTGACACGATGTAGAGGGTTAACTGTTAGTATAAATGTACTGGTCAATGGATAAATGTTAAACGTGGagtgtttttatgtaaatcaaaagcttaaaataaataaataaaaatacaagggTACAAGCGAGTTATGTGCTTTAAGGGTAGGAACCTACCCTTTACCTCCACCCTAATAGTCCTGTTTGTGAAGCGCATAATTCCACAGATgtgcgcggatctgcgctgctccaccaatgggataggAGCAATTTAgcagttctgtgcagaactgtggaagtctgcgctacacgaacgcgaccaATATTTTTGAGAGGCTCATTTTATGGGACAACGGCACTAAACAATTCAAACCAATAATTATTCATACAGTAACAATACCAACCCTAGTACTAATATGAAAATAACTATAAATGAGAACACCACCTCTGTAACTGCAACTACCACAGATACCACCATTTATAATCGTTAGAGCAATAACAGTTTGTGCAGCCGACTACTGTTTCAAGATCTTACCATGGACATGTAGGTGTATGAAGCGTAGAGCTCCATGTTCGCCATGCGATTGATGGCGGCCTCGCAGTCTCGGTGGTAGTTCTGGCGGATCTGAGACTCCATTTCGAGCGacagtttttagttttggtcGGAGGGAACGGAATAAAGcttcaacaaaaaaatatacagatcaatacaaaaataaaacctttactTTAATTATACGATAGTAAAGataaaattagtttaaattaagGAATGAGGTCGAAAGACGAAAGGCTCCGTTCAATCACTGTTGAAGCAAGAACTCCTGTCGGTTTCTTCCGAGGAATTGTAAT
>TU66005
cttatccacatagacccatggctgtaattgctgccaagttgcctctaccaaatattgactgaaggggatgattacttatgcattcaattattttctgttttgtgtttgtaattaatttaggaCAATTTGCTgcttatattttttatttttacattatggACATATTCTGAGTAGTGGCAAAAACTACTGATTAAATCCACACAATGATATTTGGAAAAGTCAATGGGGAGTGAAtagccacacagcaatctccttagacaagcattggcagtagaatggacTACTGAATAGAACAATGACTTTCAATGTGGCACCGTCATAGGTCAGTTTGtgaaatttctgccctgctagagctgccccggtcaactgtaagtgctgttattgtgaagtggaaatttctaggagcaacaacagctcagccatgAGGTGGGAGGCCAaacaagctcacagaacaggactgttgagtgctgaagcGCATAGTGCATAAAAATCATCTGTcctcggttgcaacaatcacttctgaGTACCAAACTacctctggaagcaacatcaACACAAGAACTATTTGTttggagcttcatgaaatgggtttccatggccgagatGCCACACAAGACTAAGATTACCATGCGCAATGTCAAGCGTTAGCTCGCATGGTGTAAAGCTCATTGGCATTGGACttgggagcagtggaaatgtgatctctggagtgatgaatcatgcttcaccatctggcagccTGACAGATGAATGTGGGTTTGGCGGATACCAGGAGATCACTACCTGCccgaatgcatagtgccaactgtaaagtttggaggaggaataatggtctggggcttTTTTTCATGGTTTGGGCACGGCCCCTTaattccactgaagggaaatattaatgctacagcatacaatgacattctagacgaTTCTGCGCTTCCAACTTTATGgtaacagtttggggaaggacCTTTCCTGTTttagcatgacaatgcccccgtgcacaaagtgaggtccatacagaaatgttttgtcgagatcggtgtggaagaacATGACTGGCCTGCATTGAATACCTTTGGGATTAATTGGAATACCGACATAATCGCTGAACATCAGTGCCCAACCTCACTtgcttgtggctgaatggaagcaaatctcttcaacaatgttccaacatctagtggaaagccttcccagaagagtggaggctgttatagtagcaaaagggggaccaacTCTATATTAATGctcatgattttggaatgagatgttcgatgactgggtgtccacatacttttggccatgtagtgtatgtactttgaccccctgtccagtatttttggaatatttgtTTAAGTCATGTAATCTATTGGATATGTTAAAATTTTTCAGTGTACGATTTGCCATCAACCTCCCCCCGTCGACGTCAAACCACTAGCACTCCCTCTCGGTTTACATTTCACCAACAGCCCACTTCCAGGGGTCCGGTATTTTtgtatctcaaaagtggcaacCCTAGTGGCAATCAAGGTACAGCGAGcatgactccagcatgtgaccttaactccctgtcaaccaacttttggacatTAGacagtcaggacatttcagataacagatgacTGTAAAATGAGGTGAgtttaggcagatgaagaatttggtttaaataatttatatacttaaaactgtagagttaaaatggactttccTTCTTTTGCAGGTGGTTCACGAGAGATTATAGAATAATTTATTGAACttagtgagaaagtgaaggtttcacataattacaattaataaataataatgtattatgtactaatagctggagtgagaactgatcttattttataacctccaacacattatatatatatatatatatatatattttttttgttaattcaagaaaactgaacttaatatctgggtgagtttaatggAGGGGGAGAGTGGAgaagctccatgacctcagatCTGGCCCAGGCTCTAGAGCGCTCTGATGAGCCCGAGTCCAGCTTCGCTCTGGTtccagcaatgccagctccagctctgaagaacaactaacaaaaactgtaaaatgttccATATATAAATTGTTCAACTATACTGCAATCTGTTGTATTATACTGAACTGTTTGTGTTGGCCTACTGTATGTTTGCATACTGTATTATAGTTCAAATTATACTAATACAACCACTAGCAATAATTCCATTGTTTCTTAGCATACACCTTTAGAAACGGTAAGTCATCATAGGAAGAATTGTTACATCTAAAACTAAGTTGTGTATATGGCATCAGTGCATCACTCTGTCCATCTTGTACAGTAGCGCTGTTCATCTATATCAACTAGTGATGAAAGACAACTAGTGGCGTGCTTGCCCTTTTCTCAGACTCcttacaaaactttttttttttttttttaaggcaaatcCATAGCCACTGTTTGCGTTGAAGAAGTGCATGTTTCTATAGTGCATGAGtattttcacaaacattttgcaattctaatcaataaatcaaaaaagaaaCGTGCAAAGAATAAATGTTGACGTCTTCAGTTATTTTGGGTCAAGAACAATCCAAAATCTGTATTTTGCGGTTTCAAGCTTGTCTAGACAACACACAGCGATCCATATCACTGACTTTCAGCTACATTTTACTTAATTCAAGGTTGGGCTCCGGTGGTAGATGCATGCATTTAGCAAACCCAGTGTGTGAGTGATTGATTTGGAGACATTGCGCAAGACATTGGAGCACGGCTGCACACAGAGATTTTGTCCCCCACAATGTTGCACAGAGAAGATTATAGAGAACATAAGAGGTTTGTCACCAAACAGCCAAACattcagaattgtttttttatacatagTTGAAGTAGCTACTAGGCCAACATGATAAATTTATTAAATCGACCATGAAATTAGCTATTAATCAGTAGGAAGCCTCCGTTTGGATGAGCAACTGGGCAAACAACCTTCAGTACAAAAAGCTTAAATCCAGTATAATACAGCAGAAGCTGCTGCCTGGTAATGCAAGCACACATCGTAGAGCAGGATTCATACCCCTTGAACTCTACAGTGCTGTAAGAACTGCACAGCTTGACTTATATTCTGATTATGTATTATAGTTCACACCACATCCATCAGTACTCcattatatataaactattGCACTACTTATCTTTAAAGCATTGCACCACACCACCTACATACCACTCTTACATCACACCATTCCTACTACACACCACATTATAAACCAAGTCACACCACACATTAATTATAGACATTGTGTTATATCACCCTGCAAAATATGAGTTAGCATGATCTCCCACCACCCCAACTCCTTATAAACATTGCATCAGAAGACATCCTACGAATCAGTAGGAGACATCACACCAGTCTGCTGCAAAGCATTAGTTTATTCATTTGGTACAGACATACTTCCAGACTCTGCCAGGAAAacaggtgagggagagagagagactgacaagAGCCCCAGattgagaaaaagaaagatcgTGTTAAGGAGTCCAGCATGTTTGTGCCGTGTTGCAGTTTGTGTCTCCTTCCATTCCATTTGTGAGTGGGAGTCAGTGTGCCTCATTTACAGATTATACTGATTAGTTTGTGAGTGCATGCATCTCTTTTTTTGCTTTCCATTTATAAGAGTTAGTTACCATGGCTGGTCAGCATGCAAGTGTTGGTCAGTTACCTTGGTTAGTCTGTGTCAGTTATCTTCAATCTGGGTGTTTGAGTACTAGAATCACTGAATTTCACCTCACCCAATCTGTATTAATGCATAACAATTCCCTCACACACAATGACAAACTACACAAAACAGCGCTGCAACTCAGGGGAAGAGGCTGGGGAGTGTCAGTCTCTCTGGAGGCCCTGGGCAGATCCACAGGCTGCATTTAGCTGCTGCCCCCCAGCGTGTGCTTGTCGAACAGGTACTCAGCCAGCCCGTTGCTGGGGGTGCTCATGCGGGTCAGGTTGGTCACATGATCACCAAGCTTCTTGATGGCCTCCACCTGCTCGTTCAGGTAATGGGTCTCCAGGAAGTCACACATCTGAGGAGGGGGGAGGCAGAAATAGAGAGAAAAGTTAAAGTGACAGGAGTACATCAACCCTGGTTGACTCAGGGTAGGTAGAGGAATGGGGGTAGGGTGTTGATTCACACTGGCAGACTCACATGAGGGTCGGTCTTCTCAGAGGCTAACTTGTGCAGGTCAAGCAGGGCCTGGTTGACTTTCTTCTCCAGCTGCAGGGCAATCTGCATGGCCTCCAGCCCACTGCCCCACTCGCCCCCCCCTCTTGTTCTGGAAGGACAGCAGCTTCTCAGCAtgctccctctcctcctcactGTTCTCCTTGAAGAAGTGCGAGAACCCATGCAGGGCCACATCATCCCTGGCGAAATAGCCATGGACATGTAGGTGTATGAAGCGTAGAGCTCCATGTTCGCCATGCGATTGATGGCGGCCTCGCAGTCTCGGTGGTAGTTCTGGCGGATCTGAGACTCCATTTCGAGCGacagtttttagttttggtcGGAGGGAACGGAATAAAGcttcaacaaaaaaatatacagatcaatacaaaaataaaacctttactTTAATTATACGATAGTAAAGataaaattagtttaaattaagGAATGAGGTCGAAAGACGAAAGGCTCCGTTCAATCACTGTTGAAGCAAGAACTCCTGTCGGTTTCTTCCGAGGAATTGTAAT
>TU66009
gccagactgatgtAGATCAcgtcatttagcaagaggcaaatggaggggcatcgtattcattaagagcatgtgatgtcccagtttatgtgtAGGTaagaaactcacacacacatacatacatgcacattatatatatgcacagtcacctacaaaattactggcgccattgataaagatgcgaataaaggctgtatgaaataaacacatgtaatatgtagaaagcgattgtccacaacttttattaaaagcatgctttgtttataattaaattccatgtAGCTGCTCCGCTCAGTCTGGGTCAGTCAGTGCTGAAGTCAGATGTGTTGCACAGTGACtagaccagcccaccctgatcactgattgggttaggaagaaccgtcactcaaaacctgctggaccaatggagacccaggatccacgcgTCCTTGTAAATCCCGCCACAGAATTTCACCCACCCAATCTGTATGAATGCATTACAATTCCCTCACACACAATTATAAACTACACAAGAACAGGGCTGCAACTCAGGGGAAGAGGCTGGGGAGTGTCAGTCTCTCTGGAAGCCCTAGGTGGACCCCCAGGCTGGGTTTAGCTGCTGCCCCCCAGTGTGTCCTTGTCAAACAGGTACTCAGCCAGCCCATTGCTGGGGGCACCCATGCGGCTCAGGTTGGTCACATGATCACCAAGCTTCTTGATGGCCTCCACCTGCTCGTTCAGGTAATGGGTCTCCAGGAAGTCACACAATGAGGGTCGGTCTTCTCAGAGGCTAACTTGTGCAGGTCAAGCAGGGCCTGGTTGACTTTCTTCTCCAGCTGCAGGGCAATCTGCATGGCCTCCAGCCCACTGCCCCACTCGTCCCGCTCAGGCCTTGACGTCCTGCAGCACCACTCGCCCCCCCCTCTTGTTCTGGAAGGACAGCAGCTTCTCAGCAtgctccctctcctcctcactGTTCTCCTTGAAGAAGTGCGAGAACCCATGCAGGGCCACATCATCCCTGGCGAAATAGTCCATGGACATGTAGGTGTATGAAGCGTAGAGCTCCATGTTCGCCATGCGATTGATGGCGGCCTCGCAGTCTCGGTGGTAGTTCTGGCGGATCTGAGACTCCATTTCGAGCGacagtttttagttttggtcGGAGGGAACGGAATAAAGcttcaacaaaaaaatatacagatcaatacaaaaataaaacctttactTTAATTATACGATAGTAAAGataaaattagtttaaattaagGAATGAGGTCGAAAGACGAAAGGCTCCGTTCAATCACTGTTGAAGCAAGAACTCCTGTCGGTTTCTTCCGAGGAATTGTAAT

Function

GO:

id name namespace
GO:0006879 cellular iron ion homeostasis biological_process
GO:0006826 iron ion transport biological_process
GO:0008199 ferric iron binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008957 False 303 mRNA 0.58 4 15606943 15639130
TU66004 False 3429 lncRNA 0.42 3 15603825 15623991
TU66005 True 4737 lncRNA 0.42 3 15603825 15610700
TU66009 False 1328 lncRNA 0.48 5 15603825 15623991

Neighbor

gene id symbol gene type direction distance location
AMCG00008956 NA coding downstream 7503 15542462 ~ 15596322 (-)
AMCG00008950 NA coding downstream 75064 15514634 ~ 15528761 (-)
AMCG00008945 NA coding downstream 203704 15399579 ~ 15400121 (-)
AMCG00008944 NA coding downstream 212775 15372545 ~ 15391050 (-)
AMCG00008943 NA coding downstream 275680 15301842 ~ 15328145 (-)
AMCG00008958 tnnt1,LOC107097207,LOC107689677,LOC108427325 coding upstream 10414 15649544 ~ 15660496 (-)
AMCG00008959 NA coding upstream 28686 15667816 ~ 15685050 (-)
AMCG00008963 slc1a9,LOC107578863,LOC108434930,LOC107551162,LOC105012932,LOC107680867 coding upstream 149415 15788545 ~ 15801373 (-)
AMCG00008962 NA coding upstream 188570 15827700 ~ 15830629 (-)
AMCG00008961 NA coding upstream 214084 15853214 ~ 15857199 (-)
G52692 prmt1,LOC107729532,LOC107658485 non-coding downstream 90602 15507248 ~ 15513223 (-)
G52676 NA non-coding downstream 125888 15415945 ~ 15477937 (-)
G52683 NA non-coding downstream 175174 15426916 ~ 15428651 (-)
G52666 NA non-coding downstream 319557 15280896 ~ 15284268 (-)
G52621 NA non-coding downstream 364710 15238055 ~ 15239115 (-)
G52774 NA non-coding upstream 182056 15821186 ~ 15822218 (-)
G52793 NA non-coding upstream 220393 15859523 ~ 15863705 (-)
G52794 NA non-coding upstream 226618 15865748 ~ 15865986 (-)
G52808 NA non-coding upstream 266743 15905873 ~ 15908407 (-)
G52809 NA non-coding upstream 269534 15908664 ~ 15910151 (-)
AMCG00008951 ap2a2,LOC106587467,LOC106562310 other downstream 98308 15469674 ~ 15505517 (-)
AMCG00008934 NA other downstream 546619 15032347 ~ 15057206 (-)
AMCG00008923 NA other downstream 737837 14840707 ~ 14865988 (-)
AMCG00008918 c1ql4b,LOC107673443,LOC107711019,LOC108440793,LOC107585204,LOC108271740,LOC107667333,LOC108432462,LOC100702077,LOC103376602 other downstream 888503 14693830 ~ 14715322 (-)
G52187 ptges3a,ptges3,LOC107745455,LOC107570321,LOC108433158 other downstream 1619932 13938451 ~ 13983893 (-)
AMCG00008964 snrnp70,LOC107693498,LOC107729450,LOC106600692,LOC106583923 other upstream 194910 15834040 ~ 15851810 (-)
G52782 NA other upstream 197859 15836989 ~ 15837801 (-)
G52834 NA other upstream 318537 15957667 ~ 15963617 (-)
AMCG00008971 NA other upstream 424424 16063554 ~ 16073935 (-)
G52951 NA other upstream 765580 16404710 ~ 16405126 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G45866 NA non-coding NC_048565.1 CM023219.2 42882627 ~ 42882901 (+)
eurasian perch (Perca fluviatilis) G38274 NA non-coding NC_053115.1 CM020912.1 14293933 ~ 14294157 (+)