XLOC_006030


Basic Information

Item Value
gene id XLOC_006030
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 28565179 ~ 28567486 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013615
CCTGCACTGACACGGTTAATCCATGCCATCCCAAAACAAATACCTCATGTGTCTGATGTTAAAGCCCTTTTGGATTTGGCACAGTCACAGGATGACAATGCAAAGGTGTTGCCCCATCACACTTCAGGCAGGTCTCTTTTGCTTTGGGATTCCTCTTTGATAAATTATAGGAATAAAGCCATGTTATTCTAAGGATCTCAGGAGtgtcaaagaaaaacaaataaagtcCGTCACACATACTTAATAAAAGCCCATATGGCATATTATACATTttgttgtttatgtatttattttttttaatcagtaaaatgtatttacttacaaCAGATATTTAgtatatattgaaaatatattttaggcaagaatgtaaatgtgaggggtctctccacaccaccaacattgtgcagcatccacttggatgatgtgacggcagccacaggacaacgacaCCAGTGCGCCTGCCACACACCAGCCATTGGtgtagtggagagacagtgatagagccaattcagtggatggcaATGATTGGAAGGCCATAATCGGTAAGGGCCactggagggaatttggccaggacacagtatagtgtccctaaacccaaccatcactgttatgaacgtctacacctaccacaaccccaaacccaaccattatcgttaataatgtctacaccttccccaaccctaaacccaaccatcatcggtATTACCCTCTACACCttctccaaacctaaacccaaccatcatcggtATTACCCTCTACACCttctccaaacctaaacccaaacatCATCGGTATTACCCTCTACACCttctccaaacctaaacccaaccatcatctgTATTACCCTCTACACCttctccaaacctaaacccaaccatcatcggtATTACCCTTTACACCTTCTCCAAACCTAAACCCGACCATCattgttattaacgtctacatcttccccaaacctaaacccatccATCATCATTAACCTCTACACCttctccaaacctaaacccaaccatcatcgttattaacatctacatcttccccaaacctaaacccaaccatcatcgttattaacctctacaccttccccaaacctaaactcaaccatcatcatcatcattagcctctacaccttccccacacctaaatccaaccatcaccgTTGTTAACGTCTACGCCTTCtctaaacctaaacccaaacatcaccgttattaacctctacaccttctccaaacctaaacccaaccatcattgttattaacatctacaccttccccaaacctaaacccatccATCATTGTTATTACCAGCTACACCTtccccacacctaaacccaaccatcatcatcattaacctctacaccttctccaaacctaaaccaactatcattgttattaacatctacaccttccccaaacctaaagccaaacatcatcgttattaacctctacaccttccccacacctaaacccaaccatcatcatcattaacctctacaccttccccacacctaaacccaaccatcaccatTGTTAACGTCTACGCCTTCTCTAAACGTAAACCGG
>TCONS_00013616
CCTGCACTGACACGGTTAATCCATGCCATCCCAAAACAAATACCTCATGTGTCTGATGTTAAAGCCCTTTTGGATTTGGCACAGTCACAGGATGACAATGCAAAGGTGTTGCCCCATCACACTTCAGGCAGGTCTCTTTTGCTTTGGGATTCCTCTTTGATAAATTATAGGAATAAAGCCATGTTATTCTAAGGATCTCAGGAGtgtcaaagaaaaacaaataaagtcCGTCACACATACTTAATAAAAGCCCATATGGCATATTATACATTttgttgtttatgtatttattttttttaatcagtaaaatgtatttacttacaaCAGATATTTAgtatatattgaaaatatattttaggcaagaatgtaaatgtgaggggtctctccacaccaccaacattgtgcagcatccacttggatgatgtgacggcagccacaggacaacgacaCCAGTGCGCCTGCCACACACCAGCCATTGGtgtagtggagagacagtgatagagccaattcagtggatggcaATGATTGGAAGGCCATAATCGGTAAGGGCCactggagggaatttggccaggacacagtatagtgtccctaaacccaaccatcactgttatgaacgtctacacctaccacaaccccaaacccaaccattatcgttaataatgtctacaccttccccaaccctaaacccaaccatcatcggtATTACCCTCTACACCttctccaaacctaaacccaaccatcatcggtATTACCCTCTACACCttctccaaacctaaacccaaacatCATCGGTATTACCCTCTACACCttctccaaacctaaacccaaccatcatctgTATTACCCTCTACACCttctccaaacctaaacccaaccatcatcggtATTACCCTTTACACCTTCTCCAAACCTAAACCCGACCATCattgttattaacgtctacatcttccccaaacctaaacccatccATCATCATTAACCTCTACACCttctccaaacctaaacccaaccatcatcgttattaacatctacatcttccccaaacctaaacccaaccatcatcgttattaacctctacaccttccccaaacctaaactcaaccatcatcatcatcattagcctctacaccttccccacacctaaatccaaccatcaccgTTGTTAACGTCTACGCCTTCtctaaacctaaacccaaacATCACCGTTATTAACCTCTACACCttctccaaacctaaacccaaccatcattgttattaacctctacaccttctccaaacctaaacccaaccatcatcatcattaacctctacaccttccccactcctaaacccaaccatcaccgtTGTTAACGTCTATGCCTTctctaaacctaaacccaaccatcatcgttattaacctctacaccttctccaaacctaaacccaaccatcattgttatTACCAGCCACACCTtccccacacctaaacccaaccatcaccgtTGTTAACGTCTACGCCTTCtctaaacctaaacccaaacaatcaccgttattaacgtctatactTTACTACAAGTTACGCCCCTACATCTTGCGCCCCCCCCCCATCTTGCAGTCCACAGACAGATACACTTGTCAGGATTCttacagaccacaggttgagcgccccctgctggcctcactaac

Function

GO:

id name namespace
GO:0015849 organic acid transport biological_process
GO:2000257 regulation of protein activation cascade biological_process
GO:0046942 carboxylic acid transport biological_process
GO:0015711 organic anion transport biological_process
GO:0061134 peptidase regulator activity molecular_function
GO:0061135 endopeptidase regulator activity molecular_function
GO:0030414 peptidase inhibitor activity molecular_function
GO:0004857 enzyme inhibitor activity molecular_function
GO:0004866 endopeptidase inhibitor activity molecular_function
GO:0004867 serine-type endopeptidase inhibitor activity molecular_function
GO:0030234 enzyme regulator activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013615 False 1562 lncRNA 0.42 2 28565179 28567016
TCONS_00013616 True 1665 lncRNA 0.43 2 28565179 28567486

Neighbor

gene id symbol gene type direction distance location
XLOC_006028 fgf8a coding upstream 63194 28495419 ~ 28501985 (+)
XLOC_006027 NA coding upstream 81773 28475601 ~ 28483406 (+)
XLOC_006026 slc2a15a coding upstream 123093 28417297 ~ 28442086 (+)
XLOC_006025 CR762431.1 coding upstream 150620 28406913 ~ 28414559 (+)
XLOC_006024 NA coding upstream 282856 28264236 ~ 28282323 (+)
XLOC_006031 wbp1la coding downstream 12871 28580357 ~ 28596765 (+)
XLOC_006032 borcs7 coding downstream 44827 28612313 ~ 28615893 (+)
XLOC_006033 cnnm2a coding downstream 50600 28618086 ~ 28643260 (+)
XLOC_006034 inaa coding downstream 108200 28675686 ~ 28681036 (+)
XLOC_006035 polr1c coding downstream 122869 28690355 ~ 28694924 (+)
XLOC_006021 NA non-coding upstream 759299 27785094 ~ 27805880 (+)
XLOC_006037 CU640488.1 non-coding downstream 172749 28740235 ~ 28740369 (+)
XLOC_006039 NA non-coding downstream 240606 28808092 ~ 28817882 (+)
XLOC_006042 NA non-coding downstream 348052 28915538 ~ 29097526 (+)
XLOC_006043 CU639469.2 non-coding downstream 357360 28924846 ~ 28924965 (+)
XLOC_006044 NA non-coding downstream 515601 29083087 ~ 29083291 (+)
XLOC_006022 dre-mir-30e-2 non-coding upstream 769970 27795130 ~ 27795209 (+)

Expression


Co-expression Network