AMCG00008960 (rps11,rs11)


Basic Information

Item Value
gene id AMCG00008960
gene name rps11,rs11
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 15856224 ~ 15863670 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008960
GCTTGCCCTCACCTTTACGTCACTTCCCGCCCGTGCAGATTTGGGCCCTGTGCGCCGGATGAAGGGCCTCTTTTTCTACACGACTGTGCAAGATGGCGGACACGCAGACTGAGAGGGCATACCAGAAGCAGCCCACCATCTTCCAGAACAAGAAGCGCACTCTGCTTGGGGATGGAGCTAAGGAGAAGCTGCCCAGATACTACAGGAGTGTGGGGCTGGGCTTCAAGACTCCTAGAGAGgCCATAGAGGGCAGTTACATTGACAAGAAGTGCCCCTTCACCGGCAATGTATCTATCCGTGGACGCATCCTGTCTGGAGTGGTGACGAAGATGAAGATGCAGAGGACCATAGTGATCCGCAGGGATTATCTGCACTACATCCGCAAATACAACCGCTTTGAGAAGAGGCACAAGAACATGTCTGTGCACCTGTCCCCAGCCTTCAGGGACGTGCAGGTGGGTGACATTGTCACCGTGGGAGAATGTCGGCCCCTCAGTAAGACCGTGCGCTTCAATGTGCTTAAGGTCACCAAGGCAGCTGGGGCTAAGAAACAGTTCCAGAAGTTCTAGAGGACAGAAGGACACCTCCATAgagatcaataaaaacaattgctCTTTAAATGGCATCTCTGTGTCTGACTTTGGGGAAAccagtgtgtgtgtgtgtgcgcgtgtgtgtgtgcgcacctGTCAATGATCAATTAAAATAGTTATGCATACTCAAACCCTACCCTTGTTTTGGTTGAGCTGCATTTCACCTGGTGCTAACTTGTGTTGATATCATAATGTTTGATTATCACTTTTTTCCTCAAGGGAGGTTTCCTGTCTAGTTGGGGATCTAACTTGTTTAAATGGCATTTCTGTAATATGGCAAATCATTGTATcaacattaataaatgcattgccggacaaaaacaaatataaggTATAATGTATGGAATAAAGAAACCTAACTTTAATCTTGAGAGTGGGTTTCTTATGTATTACTATATACAGGTACTATATTTGCAAGAGTGATGCGGGACAGTGCCCCGTCTGATAGTGAC
>TU66074
atattacattgtattgcATTAAAATATGATGTACTATAGTGcacactgtattgtattatattactgCTATTACCACTACTATCAATCATAATAACTACAACATCTCTTAATCTTTGTACAAAACCTGTCATTTCCTTCTTCCTGTACCACtgtctgtcttttctgtttgtcCCTCCCATCCGCTGCGGACTCGTTTGTGCGAGTGTGTGGCGCACAGCCACTTCCTTCCATTCCTATTAGTAGTATAATAGTAGCCtatagtagaagtagtagtagtaatacagTAGCAACAGAATCATTTCCACATATCTCACAAACGCTACACACACGAGCGATCAAATAATAACCGTGCATACGAATATGTATAGTCCGTGGCAATATCGATTGGAGTGTTATGGTTATGACTGTTAAATTGAAATACCATAGTACCCTCAAAATGtagcataatacaaataacaatatagTGAACTCAATTATTGTCAAGGGGAATCGTGTTCGTTGTAACAATGTGCGACACCAAAGTTTAAAGTCATGATAGACACACATCCACAACTCATACAAAGTTACCGATAAAGTAAGAGAATACAGTTCTGAAGCAGAAAACTGgtttaaaacaatacagaaagacgacgacgacgacgacgacgacgacgacagcagcagcagcagcagcagcagcatattattattattattattattataaccccATTGTGTGAAGACTGCAGGCTATGTATAGACATGTTTGGGAGCCGTTCGCAACTTGAAACCGATACATAGTTCGACCGAGTCTTAAGACGTCTTTGTACTTTAGCCTTTTTAACCACTCTCGATAATGCACCTATCGCACCCCGCCTTTCTATGTTTCTCCGATTCTCTGTCTACTTCTCTCTGTTCCCGGTCTCCCTACCCCAGTCCGGGCGGCTCCAGTCGTACAGTACTTACCCGGCTCGCCTCCCCCATTCGGCGCCGCCATCTTTGAACTGACTGGATGAGCGCTTCCGCCTCATGTCATGTGGCCGGGATTTGGGCCCTGTGCGCCGGATGAAGGGCCTCTTTTTCTACACGACTGTGCAAGATGGCGGACACGCAGACTGAGAGGGCATACCAGAAGCAGCCCACCATCTTCCAGAACAAGAAGCGCACTCTGCTTGGGGATGGAGCTAAGGAGAAGCTGCCCAGATACTACAGGAGTGTGGGGCTGGGCTTCAAGACTCCTAGAGAGgCCATAGAGGGCAGTTACATTGACAAGAAGTGCCCCTTCACCGGCAATGTATCTATCCGTGGACGCATCCTGTCTGGAGTGGTGACGAAGATGAAGATGCAGAGGACCATAGTGATCCGCAGGGATTATCTGCACTACATCCGCAAATACAACCGCTTTGAGAAGAGGCACAAGAACATGTCTGTGCACCTGTCCCCAGCCTTCAGGGACGTGCAGGTGGGTGACATTGTCACCGTGGGAGAATGTCGGCCCCTCAGTAAGACCGTGCGCTTCAATGTGCTTAAGGTCACCAAGGCAGCTGGGGCTAAGAAACAGTTCCAGAAGTTCTAGAGGACAGAAGGACACCTCCATAgagatcaataaaaacaattgctCTTTAAATGGCATCTCTGTGTCTGACTTTGGGGAAAccagtgtgtgtgtgtgtgcgcacctGTCAATGATCAATTAAAATAGTTATGCATACTCAAACCCTACCCTTGTTTTGGTTGAGCTGCATTTCACCTGGTGCTAACTTGTGTTGATATCATAATGTTTGATTATCACTTTTTTCCTCAAGGGAGGTTTCCTGTCTAGTTGGGGATCTAACTTGTTTAAATGGCATTTCTGTAATATGGCAAATCATTGTATcaacattaataaatgcattgccggacaaaaacaaatataaggTATAATGTATGGAATAAAGAAACCTAACTTTAATCTTGAGAGTGGGTTTCTTATGTATTACTATATACAGGTACTATATTTGCAAGAGTGATGCGGGACAGTGC

Function

symbol description
rps11 Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit. Orthologous to human RPS11 (ribosomal protein S11).

NR:

description
PREDICTED: 40S ribosomal protein S11 isoform X1

GO:

id name namespace
GO:0006412 translation biological_process
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008960 False 1045 mRNA 0.47 6 15859564 15863670
TU66074 True 2001 TUCP 0.44 7 15856224 15863654

Neighbor

gene id symbol gene type direction distance location
AMCG00008954 NA coding upstream 205951 15641691 ~ 15650273 (+)
AMCG00008952 syt1 coding upstream 215289 15633723 ~ 15640935 (+)
AMCG00008953 NA coding upstream 232821 15622818 ~ 15623403 (+)
AMCG00008955 NA coding upstream 247916 15599331 ~ 15608308 (+)
AMCG00008949 NA coding upstream 333928 15519629 ~ 15522296 (+)
AMCG00008967 NA coding downstream 67646 15931316 ~ 15931979 (+)
AMCG00008966 NA coding downstream 79487 15943157 ~ 15951025 (+)
AMCG00008970 NA coding downstream 128443 15992113 ~ 15992550 (+)
AMCG00008969 ppfia3,LOC101073574,LOC105926717,LOC101158391,LOC104920703,LOC103358375 coding downstream 188879 16052549 ~ 16054525 (+)
AMCG00008972 NA coding downstream 262471 16126141 ~ 16134060 (+)
G52781 NA non-coding upstream 18415 15836985 ~ 15837809 (+)
G52766 NA non-coding upstream 92081 15763937 ~ 15764143 (+)
G52717 NA non-coding upstream 153209 15627840 ~ 15703015 (+)
G52691 NA non-coding upstream 342206 15513535 ~ 15514018 (+)
G52651 NA non-coding upstream 424623 15412001 ~ 15431601 (+)
G52798 NA non-coding downstream 16387 15880057 ~ 15895419 (+)
G52817 NA non-coding downstream 89378 15953048 ~ 15955372 (+)
G52856 NA non-coding downstream 198170 16061840 ~ 16063714 (+)
G52861 NA non-coding downstream 221858 16085528 ~ 16085843 (+)
G52863 NA non-coding downstream 234570 16098240 ~ 16098446 (+)
AMCG00008931 pp12c,LOC106564933 other upstream 835378 14982573 ~ 15020846 (+)
AMCG00008919 zbtb45,LOC104952775,LOC105021497,LOC101077905,LOC102207372,LOC101487628,LOC102796714,LOC100704009 other upstream 1044467 14807297 ~ 14811757 (+)
AMCG00008920 NA other upstream 1061040 14783043 ~ 14795184 (+)
AMCG00008917 smarcc2 other upstream 1101580 14738449 ~ 14754644 (+)
AMCG00008910 NA other upstream 1313976 14527818 ~ 14542248 (+)
AMCG00008965 NA other downstream 31760 15895430 ~ 15910151 (+)
G52942 NA other downstream 498432 16362102 ~ 16362511 (+)
AMCG00008983 NA other downstream 716193 16579863 ~ 16587381 (+)
G53028 NA other downstream 808833 16672503 ~ 16673542 (+)
AMCG00008985 NA other downstream 816155 16679825 ~ 16726295 (+)

Expression


Co-expression Network