AMCG00008963 (slc1a9,LOC107578863,LOC108434930,LOC107551162,LOC105012932,LOC107680867)


Basic Information

Item Value
gene id AMCG00008963
gene name slc1a9,LOC107578863,LOC108434930,LOC107551162,LOC105012932,LOC107680867
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 15788545 ~ 15801373 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008963
ATCCTGGTGCTGGGAATCCACCCGGGGAACCCCAAGCTGCGTACCCCCTCCGCAGGGCAGCCAGCCTCATCCCCCCGTGGCCAGGAGATTGCTGCCATTGGCGACCTGGAGACAGTTGCTAGGCAGTTGGGGATGTACATGGTGACGGTGATGGTAGGGCTGTGTATCCATGGTGGCCTCATCCTGCCACTCATCTTCTTCACCGTCACCAGGAAGAACCCCTTCCACTTCTACGCTGGCATCTTCCAGGCCTGGATCACTGCGCTGGGCACTGCCAGCAGtgctggCACGCTGCCCGTAACTTTCCGCTGTTTGGAGGAGAACCTGCACATTGACAAACGTGTGACCCGCTTCGTCCTGCCCATCGGCGCAACAATCAACATGGACGGCACCGCCCTtgacaGGATGCGTACCTCCATCAATGTTGTTGGTGACTCTTTCGGTGCCGGCATTGTGGACCATCTGTCCCGCGTGGAGCTGGCCCTGATTGATGGGGAGGCAGCCCCCCCGCTGCTGCTCCCTCCTCTGCTTGAGCCCGATTTCCCTGACCCCCTCAAACCACCCCAGCTGCCCCCTCGctctccctgcccccctccccccaaccaccactaccaccacaGCCCCCAGCCATCCTACTGCGCACTACCCACtcaggaggaggagGCGGTGAAGAAGGAGcgggagcgagagagggagtggTTGAGGGAGCGAGACAGGGAGCGGCAGAAGAGGCTGCAGGACAGAGGCAGCGAGAccgaggaggaggacgaggaggagcgcgagaggggaggggaggaggggagtgATGCGGAGGAGAagcCATCACCACCCGTGACACTTGGGTTTGCATACCGGCAGCTACCTGCGGAAACTGTCTCCCCATATGGGTGCCAGCAAATTCCTTTC

Function

symbol description
slc1a9 Predicted to enable symporter activity. Predicted to be located in membrane. Predicted to be integral component of membrane.

NR:

description
PREDICTED: excitatory amino acid transporter 2-like, partial

GO:

id name namespace
GO:0006835 dicarboxylic acid transport biological_process
GO:0016020 membrane cellular_component
GO:0017153 sodium molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008963 True 906 mRNA 0.62 6 15788545 15801373

Neighbor

gene id symbol gene type direction distance location
AMCG00008959 NA coding downstream 103495 15667816 ~ 15685050 (-)
AMCG00008958 tnnt1,LOC107097207,LOC107689677,LOC108427325 coding downstream 128049 15649544 ~ 15660496 (-)
AMCG00008956 NA coding downstream 192223 15542462 ~ 15596322 (-)
AMCG00008950 NA coding downstream 259784 15514634 ~ 15528761 (-)
AMCG00008945 NA coding downstream 388424 15399579 ~ 15400121 (-)
AMCG00008962 NA coding upstream 26327 15827700 ~ 15830629 (-)
AMCG00008961 NA coding upstream 51841 15853214 ~ 15857199 (-)
AMCG00008968 NA coding upstream 94315 15895688 ~ 15898166 (-)
AMCG00008973 NA coding upstream 415165 16216538 ~ 16233132 (-)
AMCG00008974 LOC107730758,LOC105891716 coding upstream 472431 16273804 ~ 16289372 (-)
G52692 prmt1,LOC107729532,LOC107658485 non-coding downstream 275322 15507248 ~ 15513223 (-)
G52676 NA non-coding downstream 310608 15415945 ~ 15477937 (-)
G52683 NA non-coding downstream 359894 15426916 ~ 15428651 (-)
G52666 NA non-coding downstream 504277 15280896 ~ 15284268 (-)
G52621 NA non-coding downstream 549430 15238055 ~ 15239115 (-)
G52774 NA non-coding upstream 19813 15821186 ~ 15822218 (-)
G52793 NA non-coding upstream 58150 15859523 ~ 15863705 (-)
G52794 NA non-coding upstream 64375 15865748 ~ 15865986 (-)
G52808 NA non-coding upstream 104500 15905873 ~ 15908407 (-)
G52809 NA non-coding upstream 107291 15908664 ~ 15910151 (-)
AMCG00008957 NA other downstream 149415 15603825 ~ 15639130 (-)
AMCG00008951 ap2a2,LOC106587467,LOC106562310 other downstream 283028 15469674 ~ 15505517 (-)
AMCG00008934 NA other downstream 731339 15032347 ~ 15057206 (-)
AMCG00008923 NA other downstream 922557 14840707 ~ 14865988 (-)
AMCG00008918 c1ql4b,LOC107673443,LOC107711019,LOC108440793,LOC107585204,LOC108271740,LOC107667333,LOC108432462,LOC100702077,LOC103376602 other downstream 1073223 14693830 ~ 14715322 (-)
AMCG00008964 snrnp70,LOC107693498,LOC107729450,LOC106600692,LOC106583923 other upstream 32667 15834040 ~ 15851810 (-)
G52782 NA other upstream 35616 15836989 ~ 15837801 (-)
G52834 NA other upstream 156294 15957667 ~ 15963617 (-)
AMCG00008971 NA other upstream 262181 16063554 ~ 16073935 (-)
G52951 NA other upstream 603337 16404710 ~ 16405126 (-)

Expression


Co-expression Network