AMCG00008966


Basic Information

Item Value
gene id AMCG00008966
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 15943157 ~ 15951025 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008966
CGCTGACCCACGTGTTAATTTGTATGatcaaaaaaaaataaaaaatctgccGCGAAtctgtagcgcagatttccgcagttctgcacagatctgaaGAATTCCACCTATCCCGTTgttggagcagcgcagatccgcaCAGAACTACGGAAAGCTGtgctacacgaacgcgaccaCAGATACGAACTCATCGCGGTCGCGCTTCGATGACGTCAGATGTTCTAGCAAgctgtgttttccattttaacattctTATACTGTCTGAACTCGTCCGAGTCATCGTGACCGACTGCCTGACTGGTGGACATTGATCGTGATAGcgacagtcagacagacacacacgccagtcagtgtgtcatgtAAGATAGaacagcacacagagagagagacagacgagTACCTTTAACGCAGCTTGTTCAGTATGGCAGGACTATTTCATTGGCTGATGTTGCTGTCCGTCTCGCTGGGGGCATGGTCAGTGCCAATTGACCGCAATGGGAAACCCCCAGAGGATCCGCCCCCTCAGGAGGGGAAGCAAGAAGAGACTCTGCGGCAGGAGGTGTCCAGGCTGCGCATGCTGCTGAAGGCCAAACTGGACAGCACTGACCAACACAgtgtgcAGATAGACCATGCCTCCCTGCTGAAGCAATTTGAGCACCTGGACCCTCAGAACCTGCACACCTTTGAGGCCAAAGACCTGGAGATGCTGATAGAGACAGCTACCAGAGACCTGGAGAGCTACGATGCCGCCCGGCACGAGGAGTTCAAGCGCTACGAGATGCTGAAGGAGCATGAGCGCAGGGAGTACCTAAAGGGACTGGACCAGGAGCGCCGGGAGACGGAGGAGCGCCGCCTGCAGGATCTGCAGGAGAAACACAAGATGCACCCGAAGCTCAACGCCCCTggcagtAAGGCTCAGCTCAGGGAGGTGTGGGAGGAGACGGATGGACTCGACCCCCAGGAATTCAACCCCAAAACCTTCTTCACTCTCCACGGTCTGCATCCCTCCTTTACCTTTCTCTATCCCCCCATCACTgtggactccaatcacgATCGGCTCGTCAGCTTGGAAGAGTTCCTGAAGTCGACAGAGAAGAAGGAATTCAACAGCCCTGGAGAGTGGGAgACTCTGGACGAGCGGCCCCTTTACTCAGAGGCAGAGCTCCAGCAGTTTGAGGTGGAGCTAGCGGCACAGGAGGCGGAGCTAGTAAAGAAGGCGCAGCAGTTGAAACAGGAACAGGaggaactgagagagagagagagagcacttcAGGAGCAGAAGAAGGAGTACCAGCAGGCAGTGATGCAGATGTCCCAGAGACAGAGGGCCCCCCAGCCAGTAGAGGGACAACCCCCCTCGGGTCCTAATGGGGAGCTGCAGTTCCACACCGAGATGAAGAAACTGGAGCAAGgtggcgactctcctctctctcaggatgGGGCAGCACCTCAGAGTCATCTCCTGGCTGAGCCCCCCCAGAACCAACCTCTGCACACCTCCTAACCCcctacccccccccacctctttctctatctccctccctctctctatctctctcgcACAGTGTAGTAGTATTGAGCcactctctctgcctccttctctcccttctCCAACTTccactctcccctctccccctctctctctgtattctCACTTATACTGTCggctcatttaaataaagtgtctGAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008966 True 1687 mRNA 0.55 10 15943157 15951025

Neighbor

gene id symbol gene type direction distance location
AMCG00008967 NA coding upstream 11178 15931316 ~ 15931979 (+)
AMCG00008954 NA coding upstream 292884 15641691 ~ 15650273 (+)
AMCG00008952 syt1 coding upstream 302222 15633723 ~ 15640935 (+)
AMCG00008953 NA coding upstream 319754 15622818 ~ 15623403 (+)
AMCG00008955 NA coding upstream 334849 15599331 ~ 15608308 (+)
AMCG00008970 NA coding downstream 41088 15992113 ~ 15992550 (+)
AMCG00008969 ppfia3,LOC101073574,LOC105926717,LOC101158391,LOC104920703,LOC103358375 coding downstream 101524 16052549 ~ 16054525 (+)
AMCG00008972 NA coding downstream 175116 16126141 ~ 16134060 (+)
AMCG00008978 LOC108432681,LOC102199411,LOC102296518 coding downstream 479792 16430817 ~ 16451251 (+)
AMCG00008981 NA coding downstream 596592 16547617 ~ 16558958 (+)
G52798 NA non-coding upstream 47738 15880057 ~ 15895419 (+)
G52781 NA non-coding upstream 105348 15836985 ~ 15837809 (+)
G52766 NA non-coding upstream 179014 15763937 ~ 15764143 (+)
G52717 NA non-coding upstream 240142 15627840 ~ 15703015 (+)
G52691 NA non-coding upstream 429139 15513535 ~ 15514018 (+)
G52817 NA non-coding downstream 2023 15953048 ~ 15955372 (+)
G52856 NA non-coding downstream 110815 16061840 ~ 16063714 (+)
G52861 NA non-coding downstream 134503 16085528 ~ 16085843 (+)
G52863 NA non-coding downstream 147215 16098240 ~ 16098446 (+)
G52877 NA non-coding downstream 257923 16208948 ~ 16210044 (+)
AMCG00008965 NA other upstream 33006 15895430 ~ 15910151 (+)
AMCG00008960 rps11,rs11 other upstream 79487 15856224 ~ 15863670 (+)
AMCG00008931 pp12c,LOC106564933 other upstream 922311 14982573 ~ 15020846 (+)
AMCG00008919 zbtb45,LOC104952775,LOC105021497,LOC101077905,LOC102207372,LOC101487628,LOC102796714,LOC100704009 other upstream 1131400 14807297 ~ 14811757 (+)
AMCG00008920 NA other upstream 1147973 14783043 ~ 14795184 (+)
G52942 NA other downstream 411077 16362102 ~ 16362511 (+)
AMCG00008983 NA other downstream 628838 16579863 ~ 16587381 (+)
G53028 NA other downstream 721478 16672503 ~ 16673542 (+)
AMCG00008985 NA other downstream 728800 16679825 ~ 16726295 (+)
AMCG00008988 shank1,LOC108427331,LOC103392692 other downstream 780364 16731389 ~ 16737499 (+)

Expression


Co-expression Network