AMCG00008969 (ppfia3,LOC101073574,LOC105926717,LOC101158391,LOC104920703,LOC103358375)


Basic Information

Item Value
gene id AMCG00008969
gene name ppfia3,LOC101073574,LOC105926717,LOC101158391,LOC104920703,LOC103358375
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 16052549 ~ 16054525 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008969
ATGCTGTATAatatccccctccccccctcagATGTGATGGTGTGGTCCAACGAGCGTGTGATGTGCTGGGTGCAGGGAGTGGGGCTGAAGGAGTTTGCAGACAACCTATGTGAGAGCGGCGTGCATGGCTCCCTGCTGGCGCTGGACGACACCTTTGACTACGCTGACCTGGCACTGCTGCTGCAGATCCCCACCCAGAACACACAGGCCAGGCAGCTGTTGGAGAAGGAGTACAACACACTCATCACCATGGGAACAGAGAGACGGCCAGATgagGATGGCACTAAGACATTCACTCGTTCACCCTCCTGGAGGAAGATGTTCCGGGAGAAGGATCTGCGGGGCGTAACCTCTGACTCCTCTGAGACCCTGCCTGCCAACTTCCGTGCGTCCGCCCTGGCGACCCCCAGCATCTATGCTGTGCTGATGTAG

Function

symbol description
ppfia3 Acts upstream of or within vasculature development. Predicted to be active in presynaptic active zone. Orthologous to human PPFIA3 (PTPRF interacting protein alpha 3).

NR:

description
PREDICTED: liprin-alpha-3 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008969 True 432 mRNA 0.58 4 16052549 16054525

Neighbor

gene id symbol gene type direction distance location
AMCG00008970 NA coding upstream 59999 15992113 ~ 15992550 (+)
AMCG00008966 NA coding upstream 101524 15943157 ~ 15951025 (+)
AMCG00008967 NA coding upstream 120570 15931316 ~ 15931979 (+)
AMCG00008954 NA coding upstream 402276 15641691 ~ 15650273 (+)
AMCG00008952 syt1 coding upstream 411614 15633723 ~ 15640935 (+)
AMCG00008972 NA coding downstream 71616 16126141 ~ 16134060 (+)
AMCG00008978 LOC108432681,LOC102199411,LOC102296518 coding downstream 376292 16430817 ~ 16451251 (+)
AMCG00008981 NA coding downstream 493092 16547617 ~ 16558958 (+)
AMCG00008979 NA coding downstream 506497 16561022 ~ 16564235 (+)
AMCG00008982 NA coding downstream 545135 16599660 ~ 16602244 (+)
G52817 NA non-coding upstream 97177 15953048 ~ 15955372 (+)
G52798 NA non-coding upstream 157130 15880057 ~ 15895419 (+)
G52781 NA non-coding upstream 214740 15836985 ~ 15837809 (+)
G52766 NA non-coding upstream 288406 15763937 ~ 15764143 (+)
G52717 NA non-coding upstream 349534 15627840 ~ 15703015 (+)
G52856 NA non-coding downstream 7315 16061840 ~ 16063714 (+)
G52861 NA non-coding downstream 31003 16085528 ~ 16085843 (+)
G52863 NA non-coding downstream 43715 16098240 ~ 16098446 (+)
G52877 NA non-coding downstream 154423 16208948 ~ 16210044 (+)
G52890 NA non-coding downstream 189012 16243537 ~ 16244943 (+)
AMCG00008965 NA other upstream 142398 15895430 ~ 15910151 (+)
AMCG00008960 rps11,rs11 other upstream 188879 15856224 ~ 15863670 (+)
AMCG00008931 pp12c,LOC106564933 other upstream 1031703 14982573 ~ 15020846 (+)
AMCG00008919 zbtb45,LOC104952775,LOC105021497,LOC101077905,LOC102207372,LOC101487628,LOC102796714,LOC100704009 other upstream 1240792 14807297 ~ 14811757 (+)
AMCG00008920 NA other upstream 1257365 14783043 ~ 14795184 (+)
G52942 NA other downstream 307577 16362102 ~ 16362511 (+)
AMCG00008983 NA other downstream 525338 16579863 ~ 16587381 (+)
G53028 NA other downstream 617978 16672503 ~ 16673542 (+)
AMCG00008985 NA other downstream 625300 16679825 ~ 16726295 (+)
AMCG00008988 shank1,LOC108427331,LOC103392692 other downstream 676864 16731389 ~ 16737499 (+)

Expression


Co-expression Network