AMCG00008972


Basic Information

Item Value
gene id AMCG00008972
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 16126141 ~ 16134060 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008972
ATGGAAAAGCCACCTGAGGatggcggaggaggaggaggaggaggagagagggagtgtgagaACCCCAAGCACAGCAAGAATGAGAAGAATGCGGCAGAGAAGGGGGGGAATGAGGTGGAGATGGAAAAAGGGCGAGAGAACAGCAAGGAGGGcatggagggaggagggggagggggagggggagggggagagaagcaGAGGAAGGCAGAGAGCAGGAAGTCTGGGAGTCTCtggagaggtgggggggcaggggggtgggggatgaaTGACAGGCTGGCCATCAACGTCTCGGGCTTGCACTTTGAGACTCAGCTGCGCACCCTGGCGCAGTTCCCCGACACGTTGCTGGGCGACCCCAAGCGCAGGATGCGCTATTTCGACCCTCTCCGGAACGAGCTCTTCCTGGACCGGAACCGGCTGTGTTTCGACGCCATCCTATACTTCTACCAGTCAGGGGGACGGCTGCGGAGGCCAGCCAACATCCCACTGGACGTGTTCATGGATGAACTGGCCTTCTATGAGTTGGGTGCAGACACGCTGGCCAGGTTCCGGGAGGATGAGGGCTTCCCTAAAGAGGAAGTGAGGCCGCTGCCTGAGAACGAGACACAGCGGCAGCTATGGCTGCTCTTTGAGTACCCAGAATCCTCCTCTGCTGCTCGTATCATCGCTATCATCTCTGTCATGGTCATCTTGGTGTCCATCGTTATCTTCTGTCTAGAGACGCTGCCCGACTTCAAGAGCgagagggaggaggtgagagagagagaaatagagggagagaaagaggaagaaagGATTAGAGGGGTAGAggaggatggagagagggagggagagttgTCTTCAGTCTGGAGACACTGGCTGACTTCAAGAACTATCTGTATTTGCTGGTTCTCCTTCGAGTTGTTCATGCGATTTGCCAGCTGCCCTAGCAAGGCCACCTTCTTCAGGGATATCATGAACCTGATTGACTTCGTGGCCATCATCCCCTACTTCGTGACGCTGGGCACGGAGCTGGCCCGCTCCAAGGGCGGCACACCGGCAATGTCACTGGCCATCGTCAGGGTCATCCGTCTGGCTGACCACCGTGACACGGCCTTCACCAGCATCCCTGAGGCCTTCTGGTGGGCCGTGGTCACCATGACAACGGTGGGCTATGGTGACATGTCCCCTACCACGGTGGGTGGAAAGCTGGTGGGCTCTCTCTGTGCCATTGCTGGGGTGCTGACCATCTCGCTGCCTGTGCCAGTCATCGTGTCCAACTTCAGCTACTTCTACCACCGTGAGACTGAGTGCCAGGATCCCACAGAGTACACCCATGTCAGGACCGTGCtgtgggagggggagagggagggagaaggagaggtggaagaggaggaggtggaggtggagggggaggaggaaggaggcCAAGGGTACAGGCCTCTGGGAGTGGGTGAGGGCATCCTGGGGATTTGCGGGCCGCTAAATGCGGATTTCCTGGGGGGGCTAAACCCGGAGGCCAAACAGGACCCCAGCAGGCTGCAGCTATCTCTTTGGCACAGCAGGGCTCCAATGGAACTGCAGGTGCAGCTCCACGGTGGAATACCGGAGGGGAGGCAGCAAAGTGGCAGCAGCTTTCAAAATTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008972 True 1626 mRNA 0.59 7 16126141 16134060

Neighbor

gene id symbol gene type direction distance location
AMCG00008969 ppfia3,LOC101073574,LOC105926717,LOC101158391,LOC104920703,LOC103358375 coding upstream 71616 16052549 ~ 16054525 (+)
AMCG00008970 NA coding upstream 133591 15992113 ~ 15992550 (+)
AMCG00008966 NA coding upstream 175116 15943157 ~ 15951025 (+)
AMCG00008967 NA coding upstream 194162 15931316 ~ 15931979 (+)
AMCG00008954 NA coding upstream 475868 15641691 ~ 15650273 (+)
AMCG00008978 LOC108432681,LOC102199411,LOC102296518 coding downstream 296757 16430817 ~ 16451251 (+)
AMCG00008981 NA coding downstream 413557 16547617 ~ 16558958 (+)
AMCG00008979 NA coding downstream 426962 16561022 ~ 16564235 (+)
AMCG00008982 NA coding downstream 465600 16599660 ~ 16602244 (+)
AMCG00008984 NA coding downstream 525932 16659992 ~ 16671430 (+)
G52863 NA non-coding upstream 27695 16098240 ~ 16098446 (+)
G52861 NA non-coding upstream 40298 16085528 ~ 16085843 (+)
G52856 NA non-coding upstream 62427 16061840 ~ 16063714 (+)
G52817 NA non-coding upstream 170769 15953048 ~ 15955372 (+)
G52798 NA non-coding upstream 230722 15880057 ~ 15895419 (+)
G52877 NA non-coding downstream 74888 16208948 ~ 16210044 (+)
G52890 NA non-coding downstream 109477 16243537 ~ 16244943 (+)
G52896 NA non-coding downstream 177332 16311392 ~ 16319852 (+)
G52931 NA non-coding downstream 208956 16343016 ~ 16344076 (+)
G52933 NA non-coding downstream 210196 16344256 ~ 16344678 (+)
AMCG00008965 NA other upstream 215990 15895430 ~ 15910151 (+)
AMCG00008960 rps11,rs11 other upstream 262471 15856224 ~ 15863670 (+)
AMCG00008931 pp12c,LOC106564933 other upstream 1105295 14982573 ~ 15020846 (+)
AMCG00008919 zbtb45,LOC104952775,LOC105021497,LOC101077905,LOC102207372,LOC101487628,LOC102796714,LOC100704009 other upstream 1314384 14807297 ~ 14811757 (+)
AMCG00008920 NA other upstream 1330957 14783043 ~ 14795184 (+)
G52942 NA other downstream 228042 16362102 ~ 16362511 (+)
AMCG00008983 NA other downstream 445803 16579863 ~ 16587381 (+)
G53028 NA other downstream 538443 16672503 ~ 16673542 (+)
AMCG00008985 NA other downstream 545765 16679825 ~ 16726295 (+)
AMCG00008988 shank1,LOC108427331,LOC103392692 other downstream 597329 16731389 ~ 16737499 (+)

Expression


Co-expression Network