AMCG00008979


Basic Information

Item Value
gene id AMCG00008979
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 16561022 ~ 16564235 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008979
GACCAGGAagcagcagtgagagagagagagagagagagagagagagagagagagagagagagagagagtttaaaaAGGGGACAAGGGAACAGACCTTCTTGACTTGGCCACTGACCCTGTGGGAGAAAAGGGGAAGAAGAGTTAGAGTGAGAgtgaggtgagagagagaaaacgtGAAGGAAAATAACAGAGAGGAAGTAGAAAAAGAGATAAgaaaaggaggaagaagagaggaCAGAATATGGAATCTACACACTTGGAACTACTGAACTCTACAGGGGTGTCAGACAGTCCAGACACTGGACTCTTCTCTCTGTACTCTGAATCCACACACAgtgGATGGGGGGATAGTCTCCAATTTCTTACTCTCAGCAGTGTTGAGATGGATCCTCATCTGATGCACCAATCGTACACCTATTGCCCTGTGTTGCATGGCAACCAGCAAACTCCCGCCCCCTCTGAGGGTGAGGAACTGATGACCGTTAACAGTACTGCCCTCAAGATTTCTGACAGCGAATCAGATGAAAGAATATCCTATGGGGCAGAGCCAAACTTTAGTGGGGccaccacctctcctccctcccctccgcCTCCTCGCCGCCGTTCTCGTTGCCGCCTCTACCAGTTTCTGCTGGCCCTACTGGCCTCGGGGGCGATGTCCCAGAGTGTGTGGTGGCTGGACCGGGACAGGGGCGTCTTCCAGTTCTCATCTGTCCACAAGGAGGCAGTGGCAAGGCGGTGGGGTCAACACAAGGGCAACCGTACCCCCATGAGCTACCAGAAGATGGCACGAGCACTCCGGGGCTACAGGGTCAGCGGCCAAGTCAGAAAGGTCAAGAGGAAGCTGGCCTACCAGTTCAGCCCCGCCGTGCTCCAGACACTGAGCAACTGACTGCTCTGTCAGAGGGTTAACTGGTCCTGTCCTGACCTGTAACCTGTCCTGTCATGCCCTGTAACCTCAGTATCCTGGAGTTTATGTCTTGTGTGAAACATCTGAGTTTTCATTAtggttttttaaattaaattatttgtactgcctttcttttttttttttggtatgctataataaaatattctgaattTCTACTCTCAATACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008979 True 1097 mRNA 0.50 6 16561022 16564235

Neighbor

gene id symbol gene type direction distance location
AMCG00008981 NA coding upstream 2064 16547617 ~ 16558958 (+)
AMCG00008978 LOC108432681,LOC102199411,LOC102296518 coding upstream 109771 16430817 ~ 16451251 (+)
AMCG00008972 NA coding upstream 426962 16126141 ~ 16134060 (+)
AMCG00008969 ppfia3,LOC101073574,LOC105926717,LOC101158391,LOC104920703,LOC103358375 coding upstream 506497 16052549 ~ 16054525 (+)
AMCG00008970 NA coding upstream 568472 15992113 ~ 15992550 (+)
AMCG00008982 NA coding downstream 35425 16599660 ~ 16602244 (+)
AMCG00008984 NA coding downstream 95757 16659992 ~ 16671430 (+)
AMCG00008991 NA coding downstream 233839 16798074 ~ 16798529 (+)
AMCG00008990 NA coding downstream 235364 16799599 ~ 16842718 (+)
AMCG00008993 NA coding downstream 596850 17161085 ~ 17161541 (+)
G52946 NA non-coding upstream 164541 16396280 ~ 16396481 (+)
G52945 NA non-coding upstream 191608 16369172 ~ 16369414 (+)
G52933 NA non-coding upstream 216344 16344256 ~ 16344678 (+)
G52931 NA non-coding upstream 216946 16343016 ~ 16344076 (+)
G52896 NA non-coding upstream 241170 16311392 ~ 16319852 (+)
G53025 LOC100846954,LOC107575789 non-coding downstream 89958 16654193 ~ 16654923 (+)
G53069 NA non-coding downstream 271377 16835612 ~ 16858245 (+)
G53115 NA non-coding downstream 394278 16958513 ~ 16959031 (+)
G53128 NA non-coding downstream 445287 17009522 ~ 17009721 (+)
G53131 NA non-coding downstream 455450 17019685 ~ 17019964 (+)
G52942 NA other upstream 198511 16362102 ~ 16362511 (+)
AMCG00008965 NA other upstream 650871 15895430 ~ 15910151 (+)
AMCG00008960 rps11,rs11 other upstream 697352 15856224 ~ 15863670 (+)
AMCG00008931 pp12c,LOC106564933 other upstream 1540176 14982573 ~ 15020846 (+)
AMCG00008919 zbtb45,LOC104952775,LOC105021497,LOC101077905,LOC102207372,LOC101487628,LOC102796714,LOC100704009 other upstream 1749265 14807297 ~ 14811757 (+)
AMCG00008983 NA other downstream 15628 16579863 ~ 16587381 (+)
G53028 NA other downstream 108268 16672503 ~ 16673542 (+)
AMCG00008985 NA other downstream 115590 16679825 ~ 16726295 (+)
AMCG00008988 shank1,LOC108427331,LOC103392692 other downstream 167154 16731389 ~ 16737499 (+)
AMCG00008986 shank1,LOC108427331 other downstream 182452 16746687 ~ 16750798 (+)

Expression


Co-expression Network