AMCG00008983


Basic Information

Item Value
gene id AMCG00008983
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 16579863 ~ 16587381 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008983
GGGGGAGGCTGTTGGAACCGATTGGACCGCACCtacaggacacacacacccggtaTCGACCTAGTATTGGTATCGTGTTCGGATCAGTTCTGCTATAATACAGACTACAGTGTTGGGGATCACAGGGTCTGCGAGggGGGATGCAGGCAGTGGGAGACCTGTGTCTGaaacaggacaatgacctgCTCTtCTGTGAGCAGTGTCAGCTCTACTTCCGTGATTCCTGCCCCCGGCATGGGCTCCCACACTTCATCCACGATTCCCCTgctgaaggagagagggagcagggcagggggcggaggagagagagagcagcagtaATAGGAGTGGCCTGggcctcagagagagagaaggaggagcagagggcagtgtgggGgtttgTGGCTTGTGCCTCGACGGAGGAGGAGCACAACCTCACTGTGTTCCAGTATAGGGGGCGGATCTACTACCGCACCAACCGACCAATCACAGCTGGTCAGGAGCTGAGGGTGTGGCTAGGGGAGGAATACGCCCACACACTGGGGCTCAGACTGGgtgaaCACTTCAAGTACGAGTTTGGTGAGAAGGAGCTCCTGATGCAGCTCTTCCAGGACCTGCAGGCTGGTCCCTCCCCCCACCCAATCACCAACAGCAGGTCAACTGTCGCAACCTCCATCGTCATCAGCAACATCTGTAGCCAGGGCTGCTGGGATGCTGCCCCTGGGGGCCAGAGGGTGGAGGGTGGCcagcaagagggagagagagagggagcaggagagaaGCAAAGAGACGcacagagggacagggagagagactgggaggacagagacaggagagagagggatggagacaGGGATGGCAGGAGCAGACTCTCCCTCCCGTctacccccaccaccaccaccaacaccatccccctcctccccccgtCTGCCCTACCCGGTGGCCACAGGAAAAGCAGCTACGGTGGCCCAACACAGTGTCAAGCCTCCACCACCTTCAGCACCACTCAGAAAGCACCCTACATCACTCGGGAGCATGGAGGCGCGATAGGAGGGGGGTACAAGTTCGCAGAGGGCACCCAGAATCTGGTGAGCCTGGGCCGGGCTCAGAGTCGGTACTGGACCTTCTTTGGGTTCCAGGGTGACTCATTCGGACGCATCTTGGACAAGTCCAAGATCATCTGCAAGCTGTGCACCGTGCGTCTCTCCTACAGCGGCAACACCACCAACCTGCGCCAGCACCTCATCTACAAGCACCGTGCCGAGTACAACCGGCTGGTGGGGGCCGCCTCCTCACTGCCCCTGCCCCCCAAACTGGACTTCCTGATGGGGGCTCAGCCACAGGGTCAAGGTCAGGGTCAGGGATCAGTTGTCAGCGTGCCATCTCCTGTTGTGTGCGTGGCTGAGGATGCTCTCCCTGGGGCgcggagtgggagtgggagtagGCACTCTCAGAATATTGGCTCAGAACGTGTGGGAGCTGCCACGCTCTCCTACCCCGTTCCCGTCCCAGTCCCTTCTCGGGTAGTCTTGCCCCCCGTCGCACACGGTCTGTCCTCAGCCCGGACTACCTGCGCCATCGCTAACTTCCTAGTCTGTGACCTTTTGCCCCCAGAGACGGTAGAAGGGGAGGGCTTCCTGTCTCTGCTGTCCACCCTACAGCCAGCCTACAGGGTCCCCCATGCCCACTTCCTGTCCCGGAGCATGCTGAGGCAGGCCTACAGGAAGGGGAGGGAACACTGGGCTGGGCTGCTGCATGAGGTGAAGACAAGGGGTATGCTCACTGGTCCCCCATTCCGTCCTTCCCAGCTCCCTGACTGCACTAGCCTGAAGGGGAAGCAGCAACATCAGGCAAATCGGGATCCAACGGCTGACGCCAAAGTCAAACACTGCTATTCCTCCTCCGGGGCTTTGGCTGACATTCTCTCTCCTGCCCCAACTCcgtcttcttcctcctcctcatcccccccacccccccagatCCAGAGAgtggagaaagaggaggaggggggagagagggaggagaaggaagtgtggaaagggaaagggagagggggaaggggaaggggaagggtgGAGGCTAGAGTGAGACAGATAGCCAGTGAGTGGGGGATAGAGGCACCAAGTTTTGTGGTGctgggaggggaggaggaggaggaggaggaggaggatttggaatgggagagagggagagggagatatAAAGAGAGGGAGATGAAGAGAGCAAGAGGCTGCTGGGagttggaggaggaggaggagcaggaggaaaAGGtaggggagggagaagagggagagaggaagagaaagagagagagagatgaggaggTGGTGGGAGTCCGAGAGagagcgacagagagagagggagagagtgagccCAAtactgatactactactactacacctACCTCCAGTCCTCACCCTCCCCAGGAGACCCTCCGCCCACCAACCTTGCCCCTACAAATTGAGCCCCAGGTTCCTTGGGCCTACCCTCCCATACCCTGCCTTGCAGCCACCCTGAGACAGTGTGTGGGGTCACTGCTGCAGCGGCCAGAAGTCTCGTTGGCTCTCTGTAAGGCCCAGGCTCTGGCCCGGCTTCTGCTGGCccgagaggaggaggaggaggaggaggaggaggaggaggaggaggatgatgatgatgatgatgagaggAAGCTAGAGTTCCAACAATCGCAGGAGGCCACCAGCTCATCCCATGGCCGTCCCTGTCTCCAGCTTTCTGGGCTGGGCAGGGATCCCCAATTGAGACCCAGGCTTCAGTTGTTGGCCCAGGCCGGCCGCCCCTATCCTCCCTCTCTCAACTGGAATTGCCTGTACTCCCTCCTCCAGACACTGTCTGACAAccgtctctttctctcctcccttcTCCCATCTTCCCCAACCCTCTCCTCCTTTCCCTCTTCCTGCCCTGCTCCCACTTCTACTcctccttcttcctctcctcctccttctgtCTCTCCTCCCCGAGCCTTGCTGCTGCCAAACCTGGACACTGAATCTGGAGTGACTCCAGATTCTGCAGCCAGTGTGAACGCTGCCTCCCGATCTGCAGTCAAACCAGATGCCGTGTTTgcagcccccaccccctgtcCGGACAGTGCAGACTGGGCTGTACTGGGTGGTCTGGCGAGCCTGCTGAAGCCAGTGTCAGTGGCCTGCGAGACTCTCTCCCACCAGCGCttccccaccctctctctcgtGCGGCCCATCGTTGCCTCCTTCCTCTCCCGCCACTACGCCCCTTCCCCCTCAGACACCCCCTTTCTGCGAGGGTCCAAGCGGCAGCTCCGGGACCTTCTGGTTCGGCGCTATGGAGACCGCCGCGTCGCCCGAGCACTCAACCTGGCCACGGCCCTGGACCCCCGCTTCCGAGGACTGGAATTCCTGGAGCCAAGGGAGCGAGTGGGGACATTGGCCCAGCTGAGGCGGGAGGCGGCAGCACTGGCCAGGCAGGTGATGCAGGTGGACGGGGAGGGGAAACAGGCAGGAGTGAGGAAACAAGAGGAGGGGAAAGATGAGGATGAGGaaagagaggaggagggggaggggggtcccTGCACGAGGAAGAGACACAGGCAGGGGAGGGAACAAGGGAAAGGGAAAGAAGAAGAGGACACAGGAGAAGGAGGGGAGGACAGTGAACTGGAATACAAGGAAGTGAAGATCAaacagggagaggaggaagaggaggagaggaaaggagacTTGCAGACACTCGCACCAAACACACCCAAAACGCACCAAAAACACCTACCCTCCCACTCTCCCTTGGGCATCGAGTTCCTCCTGGGTGACCTGTGCGGCCCCCCTGtgccacccccctccccaccgtCGTTATCACAGCAGGCCGAGCGTGAGCTCACCAACTTCAGGGAGGGGCCTGGGGCTGCCCTGTCTGAGGACCCCGCGGGCTGGTGGCGTGTCCAAAAAGCAGGCtaccccctcctctcccccttGGCACGCCGCCTCCTGGCCCCCCCCGCCACTGCTGGCCCTGCCCCCTGGCTGCTGACCCCAGCAGGGGCAGTGATGAGCCATCGTAGAGCCAACCTTCCGCCT
>TU66345
GGGGGAGGCTGTTGGAACCGATTGGACCGCACCtacaggacacacacacccggtaTCGACCTAGTATTGGTATCGTGTTCGGATCAGTTCTGCTATAATACAGACTACAGTGTTGGGGATCACAGGGTCTGCGAGggGGGATGCAGGCAGTGGGAGACCTGTGTCTGaaacaggacaatgacctgCTCTtCTGTGAGCAGTGTCAGCTCTACTTCCGTGATTCCTGCCCCCGGCATGGGCTCCCACACTTCATCCACGATTCCCCTgctgaaggagagagggagcagggcagggggcggaggagagagagagcagcagtaATAGGAGTGGtagggggaggaggaggtggagttAGTCGAGCTGTTCTGTCACTGCCAACAGGCCTGggcctcagagagagagaaggaggagcagagggcagtgtgggGGTATTTTGTTGCCACCCCTCTCTGCCCCCAGGCGTAATTTTTGGACCTTACCAAGGAGAGATACTCTTACACAGGAAGGACTGCACAGTCTTCTCCTGGGCGATTAAGGAGAATGGGACGTACTTCTATGTTGACGCCTCGGACGAGAACAGCTCTAACTGGATGAGgtttgTGGCTTGTGCCTCGACGGAGGAGGAGCACAACCTCACTGTGTTCCAGTATAGGGGGCGGATCTACTACCGCACCAACCGACCAATCACAGCTGGTCAGGAGCTGAGGGTGTGGCTAGGGGAGGAATACGCCCACACACTGGGGCTCAGACTGGgtaagagggggagggagagaaagaggaaaggGGAGGTAGTATAGATGCTGACtgacactcactctctctctctcaggtgaaCACTTCAAGTACGAGTTTGGTGAGAAGGAGCTCCTGATGCAGCTCTTCCAGGACCTGCAGGCTGGTCCCTCCCCCCACCCAATCACCAACAGCAGGTCAACTGTCGCAACCTCCATCGTCATCAGCAACATCTGTAGCCAGGGCTGCTGGGATGCTGCCCCTGGGGGCCAGAGGGTGGAGGGTGGCcagcaagagggagagagagagggagcaggagagaaGCAAAGAGACGcacagagggacagggagagagactgggaggacagagacaggagagagagggatggagacaGGGATGGCAGGAGCAGACTCTCCCTCCCGTctacccccaccaccaccaccaacaccatccccctcctccccccgtCTGCCCTACCCGGTGGCCACAGGAAAAGCAGCTACGGTGGCCCAACACAGTGTCAAGCCTCCACCACCTTCAGCACCACTCAGAAAGCACCCTACATCACTCGGGAGCATGGAGGCGCGATAGGAGGGGGGTACAAGTTCGCAGAGGGCACCCAGAATCTGGTGAGCCTGGGCCGGGCTCAGAGTCGGTACTGGACCTTCTTTGGGTTCCAGGGTGACTCATTCGGACGCATCTTGGACAAGTCCAAGATCATCTGCAAGCTGTGCACCGTGCGTCTCTCCTACAGCGGCAACACCACCAACCTGCGCCAGCACCTCATCTACAAGCACCGTGCCGAGTACAACCGGCTGGTGGGGGCCGCCTCCTCACTGCCCCTGCCCCCCAAACTGGACTTCCTGATGGGGGCTCAGCCACAGGGTCAAGGTCAGGGTCAGGGATCAGTTGTCAGCGTGCCATCTCCTGTTGTGTGCGTGGCTGAGGATGCTCTCCCTGGGGCgcggagtgggagtgggagtagGCACTCTCAGAATATTGGCTCAGAACGTGTGGGAGCTGCCACGCTCTCCTACCCCGTTCCCGTCCCAGTCCCTTCTCGGGTAGTCTTGCCCCCCGTCGCACACGGTCTGTCCTCAGCCCGGACTACCTGCGCCATCGCTAACTTCCTAGTCTGTGACCTTTTGCCCCCAGAGACGGTAGAAGGGGAGGGCTTCCTGTCTCTGCTGTCCACCCTACAGCCAGCCTACAGGGTCCCCCATGCCCACTTCCTGTCCCGGAGCATGCTGAGGCAGGCCTACAGGAAGGGGAGGGAACACTGGGCTGGGCTGCTGCATGAGGTGAAGACAAGGGGTATGCTCACTGGTCCCCCATTCCGTCCTTCCCAGCTCCCTGACTGCACTAGCCTGAAGGGGAAGCAGCAACATCAGGCAAATCGGGATCCAACGGCTGACGCCAAAGTCAAACACTGCTATTCCTCCTCCGGGGCTTTGGCTGACATTCTCTCTCCTGCCCCAACTCcgtcttcttcctcctcctcatcccccccacccccccagatCCAGGTGGAGGAGCCTGTGGTGTCTGTGAGTGGGGAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008983 True 4055 mRNA 0.61 8 16579863 16587381
TU66345 False 2293 TUCP 0.59 5 16579863 16583929

Neighbor

gene id symbol gene type direction distance location
AMCG00008979 NA coding upstream 15628 16561022 ~ 16564235 (+)
AMCG00008981 NA coding upstream 20905 16547617 ~ 16558958 (+)
AMCG00008978 LOC108432681,LOC102199411,LOC102296518 coding upstream 128612 16430817 ~ 16451251 (+)
AMCG00008972 NA coding upstream 445803 16126141 ~ 16134060 (+)
AMCG00008969 ppfia3,LOC101073574,LOC105926717,LOC101158391,LOC104920703,LOC103358375 coding upstream 525338 16052549 ~ 16054525 (+)
AMCG00008982 NA coding downstream 12279 16599660 ~ 16602244 (+)
AMCG00008984 NA coding downstream 72611 16659992 ~ 16671430 (+)
AMCG00008991 NA coding downstream 210693 16798074 ~ 16798529 (+)
AMCG00008990 NA coding downstream 212218 16799599 ~ 16842718 (+)
AMCG00008993 NA coding downstream 573704 17161085 ~ 17161541 (+)
G52946 NA non-coding upstream 183382 16396280 ~ 16396481 (+)
G52945 NA non-coding upstream 210449 16369172 ~ 16369414 (+)
G52933 NA non-coding upstream 235185 16344256 ~ 16344678 (+)
G52931 NA non-coding upstream 235787 16343016 ~ 16344076 (+)
G52896 NA non-coding upstream 260011 16311392 ~ 16319852 (+)
G53025 LOC100846954,LOC107575789 non-coding downstream 66812 16654193 ~ 16654923 (+)
G53069 NA non-coding downstream 248231 16835612 ~ 16858245 (+)
G53115 NA non-coding downstream 371132 16958513 ~ 16959031 (+)
G53128 NA non-coding downstream 422141 17009522 ~ 17009721 (+)
G53131 NA non-coding downstream 432304 17019685 ~ 17019964 (+)
G52942 NA other upstream 217352 16362102 ~ 16362511 (+)
AMCG00008965 NA other upstream 669712 15895430 ~ 15910151 (+)
AMCG00008960 rps11,rs11 other upstream 716193 15856224 ~ 15863670 (+)
AMCG00008931 pp12c,LOC106564933 other upstream 1559017 14982573 ~ 15020846 (+)
AMCG00008919 zbtb45,LOC104952775,LOC105021497,LOC101077905,LOC102207372,LOC101487628,LOC102796714,LOC100704009 other upstream 1768106 14807297 ~ 14811757 (+)
G53028 NA other downstream 85122 16672503 ~ 16673542 (+)
AMCG00008985 NA other downstream 92444 16679825 ~ 16726295 (+)
AMCG00008988 shank1,LOC108427331,LOC103392692 other downstream 144008 16731389 ~ 16737499 (+)
AMCG00008986 shank1,LOC108427331 other downstream 159306 16746687 ~ 16750798 (+)
AMCG00008995 NA other downstream 743511 17330892 ~ 17343676 (+)

Expression


Co-expression Network