AMCG00008985


Basic Information

Item Value
gene id AMCG00008985
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 16679825 ~ 16726295 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008985
ATGCCTCTGAGCCCCCTCTCCAGTGACGAGGAGCAGCAGAGCATGCTGGGAAGGTACCGGGAGGAAGAGGtagaagacgaagaagaagaaatagaagaagaaagtgaaggaggaagagaaagaggacaaggagagggagaggaaggggatAATCTTGGGAGAAGAAGAgcgagaggaggagggggagggggagggggagcagaGACAGGAAGCGAAGGatcagaagaggaggaggaagaggagggggaagaagaggaagaggaagaagaggaggagggaggggacGAGGAAGTGGACGGAGACCAaggcagagagggggaggggctacACGGCAGCCAACCAGGTggcaggaggagggaggggcCAGGCATGATTGGACGGCTTGCTCCAACAGTAGCTGGGGGCAATCGGGTGCCCAGCAACCCAGGACACTACAGCAAACACAACCCTAGCCACGGgcacaacaccaacaccaacccTGCTGGACAAGGAAGTGGCCCCAACTCCTCATCTTCCTCCATGGCAGGGAGGGGCCGGCTGAGGGAGAGGAGCCACAGCTCTGCCCCTCCCCCTGCTGATGCACAAATTAACATGATGGTATTCCGCATCGGCATTCCAGACATCAAGCAAACGAAGTGTCTGCGGTTTAACCCAGATGCCTCAGTGTGGTGTGCAAAGCGGCAAGTGCTGTGCTCGCTAACTGAGAGCCTGCAGGATGTCCTCAACTATGGTCTGTTCCAGCCTGCCAGCGATGGGCGGCATGCCATGTTCCTGCAGGAGGAGCGGCTGCTCAGGGACTACCCACAGTCCTTCGAGCGAGGGGTGCCATACCTGGAGTTCCGCTATAAGACACGAGTTTACAAACAGACCAACCTGGATGAGAAGCAGCTGGCCAAACTGCACACCAAGgccagTCTGAAGAAGTTTATTGACTATGTCCATAGTGCGCACATCGACTTCCGCTCCCGTGATGGCCTGACCCCCTTGCACAAGGCCGTGCGTGCCCACAACCACCCTGCGCTGCTGGCTCTGCTGGAGCTGGGTGCCTCTCCTAACTATAAGGATCGGCGTGGCCTGACCCCGCTGTACCACTCCGTGATGCTAGGGGGCGACACCTCATGCTGTGAGAGCCTGCTGTTCCACAGGGCTGCTCTGGGCGTGACGGACGAGAATGGCTGGGAGGAAACGCATCAGATCAGGGGTGAAGAGGAGTGTGGAATGCTGGAGATCCACGAGGTGGCTGTGATGTCAGGACACTTTGAACTGGGAGAGATCATTAAGAACCACAGAGATTCAGATGTAGtgccatTTCTGGAGTCTCCAAAGTACGTTCCCCAGCGCAGAGAGAGCGCTCGAACCCTGACCCTGCCCCACCCCCTCCTGCGGGCCAACAGCGACAACAGCATGGTGGTGCCGGACTGGATGGCAGTGACTGGACCACAGACTGGACTCAATATCGTCTCTGTGCAGggTTATAAGCCCTCAGGTACGATGCGCAGCTCCAGCAGTCCCCGGGGGGCACGCAACCGGTCCCCGTCCCGAGGGAGGGGGGTCCCAGAAGAGGGGAGGAAACAAACGAGAGGACGACAGGGGCACAATATCTACTGGGAACCAATATGCAGCATGTCCAGCTGCAACAACTCACCAATACAGACCCATGCTGGATCTGGTCTGTCCAATATAGTTTACACTGAGATCCGGACCCTGCCTGcatctccccacccccccagggCCAGGCTGACCAGGGAGCGCAGGACAGGGGATCTCACTGCCAGCTTGGTGTGGGGGCAGCTGGGTGCGGTTTCAGGCCAGGGGAGCAGACCGAGCATCTCCACGCGGTTCTGCAGGAGGTCTGTCTCGGGCTTGGCCAGTTCTTCCCAGAGCAGGGGAAGGTTGGAAGGCTGGTTCCAGAGGGGCATCCCAGTTCTGCTTCTCCCAGTGGGTCAGGTGCCAGGGGGGCCAGGAGGAGCCACAAGTCAGATTCTGCTGGGCCTGACAGACTGGGCTGCCCTGGGGGGGAAAGGAGGAGTGGGAGTCACCGATCCATCAAACTCCTGGGGGTGGAGACAGTGCTGCAGATTGAGGAGTGGGAAGATCACTGTCCCACTGAGTACTCTGGGgacaggaggggaggggggaagagagagcaagggagagagtgagagagacggGTATcgagagggaagaggagagagacagagatag
>TU66382
agagcaagagagggtgTGAGAATTtgccacgcacacacacacacacacttgcacagggagacagagacagggagagagagcgagatagAGGGAGGGACAGAAATACTCTACCACAGCAGAGGGATATCTTGCAGAACGAAGGGATATTGCAAGATGGAGGAGAAGAAAACGGGGATGAATGGAGGAGTGCCGGCAGCTCTTTGATCACCTCACGCTGGGTCTCTGACATTTGTCGTTCATAgcccatccctctctcctgtattcagtcattaattaattatttctggtTGCCcatcatttctctctctctctctctctctctcactctatcCTCCCCAGTTcccttctccccctcctcctcctcctcctccacttccTCCTCTCTCTACACTACACCTCTCTCCCTCGCTTCCTCGTTCACtcgtctttttgttttattctttcggCCACCCGTGTCACTTGCTTCCCTCGCTCCGGAGGAcgggaggagaggaggacaggaagaggaggaagaggaggaagagactGAGACGTACAGTCCACactctgacagacacacacattccccAGCACAtgtcactctctctcctggTATGAGGTCACGGGGGTCGTTGCCGTGCACGTGCCCCCGGTCGCCATGACAATGCCTCTGAGCCCCCTCTCCAGTGACGAGGAGCAGCAGAGCATGCTGGGAAGGTACCGGGAGGAAGAGGtagaagacgaagaagaagaaatagaagaagaaagtgaaggaggaagagaaagaggacaaggagagggagaggaaggggatAATCTTGGGAGAAGAAGAgcgagaggaggagggggagggggagggggagcagaGACAGGAAGCGAAG

Function

GO: NA

KEGG:

id description
K15009 SHANK; SH3 and multiple ankyrin repeat domains protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008985 True 2205 mRNA 0.59 12 16683716 16726295
TU66382 False 860 lncRNA 0.54 2 16679825 16683932

Neighbor

gene id symbol gene type direction distance location
AMCG00008984 NA coding upstream 8395 16659992 ~ 16671430 (+)
AMCG00008982 NA coding upstream 77581 16599660 ~ 16602244 (+)
AMCG00008979 NA coding upstream 115590 16561022 ~ 16564235 (+)
AMCG00008981 NA coding upstream 120867 16547617 ~ 16558958 (+)
AMCG00008978 LOC108432681,LOC102199411,LOC102296518 coding upstream 228574 16430817 ~ 16451251 (+)
AMCG00008991 NA coding downstream 71779 16798074 ~ 16798529 (+)
AMCG00008990 NA coding downstream 73304 16799599 ~ 16842718 (+)
AMCG00008993 NA coding downstream 434790 17161085 ~ 17161541 (+)
AMCG00008996 NA coding downstream 697151 17423446 ~ 17453217 (+)
AMCG00008997 NA coding downstream 766186 17492481 ~ 17601018 (+)
G53025 LOC100846954,LOC107575789 non-coding upstream 24902 16654193 ~ 16654923 (+)
G52946 NA non-coding upstream 283344 16396280 ~ 16396481 (+)
G52945 NA non-coding upstream 310411 16369172 ~ 16369414 (+)
G52933 NA non-coding upstream 335147 16344256 ~ 16344678 (+)
G52931 NA non-coding upstream 335749 16343016 ~ 16344076 (+)
G53069 NA non-coding downstream 109317 16835612 ~ 16858245 (+)
G53115 NA non-coding downstream 232218 16958513 ~ 16959031 (+)
G53128 NA non-coding downstream 283227 17009522 ~ 17009721 (+)
G53131 NA non-coding downstream 293390 17019685 ~ 17019964 (+)
G53137 NA non-coding downstream 320719 17047014 ~ 17048098 (+)
G53028 NA other upstream 6283 16672503 ~ 16673542 (+)
AMCG00008983 NA other upstream 92444 16579863 ~ 16587381 (+)
G52942 NA other upstream 317314 16362102 ~ 16362511 (+)
AMCG00008965 NA other upstream 769674 15895430 ~ 15910151 (+)
AMCG00008960 rps11,rs11 other upstream 816155 15856224 ~ 15863670 (+)
AMCG00008988 shank1,LOC108427331,LOC103392692 other downstream 5094 16731389 ~ 16737499 (+)
AMCG00008986 shank1,LOC108427331 other downstream 20392 16746687 ~ 16750798 (+)
AMCG00008995 NA other downstream 604597 17330892 ~ 17343676 (+)
G53298 mybpc2 other downstream 1003071 17729366 ~ 17730660 (+)
AMCG00009009 NA other downstream 1191253 17917548 ~ 17920592 (+)

Expression


Co-expression Network