AMCG00008986 (shank1,LOC108427331)


Basic Information

Item Value
gene id AMCG00008986
gene name shank1,LOC108427331
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 16746687 ~ 16750798 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008986
CCACCCCCTTCCAAGCCCTTTGCCTCCAAGCCCCTCCCCTACTGGACCAAATTTGACGttgctgattggctgagctaCTTGAACCTGGGCGAGCACCGTGACCGTTTCCTCGACAATGAGATTGACGGCACTCACCTGCCCTCCCTGACCAAGGAGGACTACCTGGACCTGGGAGTGACCCGTGTGGGCCATCGCATGAACATAGAAAGGGCCCTCAGGCGAGTGatggacagCTCCCCCTTTACTCCAGCAGAGAGAATTCGGGGTAGGAGGAAGATGGACACAGTACTCTACCAAGATGGCCAACTTTTGGTGGCGGGGGGGTTGTTTGGAGAGACGTCCTAA
>TU66402
CCACCCCCTTCCAAGCCCTTTGCCTCCAAGCCCCTCCCCTACTGGACCAAATTTGACGttgctgattggctgagctaCTTGAACCTGGGCGAGCACCGTGACCGTTTCCTCGACAATGAGATTGACGGCACTCACCTGCCCTCCCTGACCAAGGAGGACTACCTGGACCTGGGAGTGACCCGTGTGGGCCATCGCATGAACATAGAAAGGGCCCTCAGGCGAGTGatggacagGCTGTCAACTCCATTCCCAGTGTCTGCCCTTTCTCCTCGGGAGGGACGgatggagagaaggagggatGAGGGCACTCATAGCtgaggagtgagagagagacacatactctcacacaaacatactcacgcacacacacacacacaaagacatactcacacagacacacacttacacacacacagttagacAGACAAATTTCTGCACACCTCCCTTCCTCTTTTACAGACAGATTGACTGAGAGatagggagagacagagagagagagaggtagggagagagggagggagggacaatATTTTGATAGACACCTACAGAACTCTCAGTTGAGTTGTGGAACCCCGTCGCCACAGTGAAATTTCCCCCATGCAACTGACCCCCGTCTGCATGGAAACCACTCATCAGTATTCATATAATATCACTGCCCCTTTCCCCAGCTCCCCCTTTACTCCAGCAGAGAGAATTCGGGGTAGGAGGAAGATGGACACAGTACTCTACCAAGATGGCCAACTTTTGGTGGCGGGGGGGTTGTTTGGAGAGACGTCCTAACACGCAAGCCCCCTATGCGCAGCAGTACAACACTGTAACTTGGCAAAATACTGCACCTGCAACAGACTCTACcaacagagaaaaaaagagaggaagggagagatggagagagaggaggactgTCTCACAAGGATGAACAATGGGATATTAACCTTATGCTCCCCCCCACGCCCCCATCCCGACATCCCAGCTGACATACTCTCCTCCTCATCATCACTCCATCCCCAAGCTTCTGGAAGAGGGGAATGAGGAAGCAGAGGGAGTGCAGTGGAGGGATGGATAGACAATTAACTAACACTGCCCTTCCTTATTAGCGGACGCTCATTAACATTAAGACTGGATTTTCAGCTTGGACAGAAGTGGGTCGGCTGTGATGCTCTTACAGCTATTAACAATGATGaagaatattattaatactacaaCTGTGAGCTACAGTTCTCCTGTGTGCCTGAACAGAGAGAGGGGCGCTGTTTcccactgtattattattattattattattattatcatcatcattattatgaccaatattattattagtgacaGTGAGCTACAGTTCCTATGTGTGCCTGAACAGAGATAAGGGGCGCTGTTTaccactgtattattattattattattattattattattattgagtgaGCTGCAGTTCTCATGTGTGCCTGAATATAGCTGTGGGCGCTGTTTCTCTCACTTAATCATCATTACTATGAATCAGATTCTTATTTTAAGTCAATGTagtgtacatatatgtatatagttgaTGTGTGTGCgcctgcgtgtgtgtatatatgcataattTGGGATATTTTCTGTGATGTTTGGACCCCAAAAGGGTAGACCTGACAGGCTTTAACAAGATAGCAATTacactttgaaacaatgtattgcaATATAAACTGAGCATGCAAGACAGACAGATGCTATACAgatctgagagagagtgagagtgagagagtttAATTATGTAGCTTTATTCTGTAGTTCACAGCTACAAATATGATCATGACAGACAGAATGAGACAGAGAAACTGAGGGATAGatagatggagaaagagagaaagacagacagagaacgGTATCTGGAACTCAACACTgccccccatctccctctccctctattttgctctctctgtctcttttgcAGTAATTGTATAATAAAGGGCTTTCtctatatctgtatatctgtcaatctatctatatatctatctatctatctatctatctatctatctatctatctatagatCTATCTACCTCTTTGGCTGATAACAAGGTCTACTcaatctctctccccctttccccctctctctcgctctttaaCAAAGAAATGGAGTAAGTGagtttatctgtctgtctgcctgagtGTCAATGTATACTTTATCTATAATACATACGGGACagacatacacactcacactctcacacacaatgacacacacacacacacacgcaggcagACACATACACAAGATTATTGGATTATAATTTTGatgaatgtatttgtatatagagctacataataataataatcataataatgatgatgatgatgatgataaagatGATGGTGAAGATAGAGGTGTAATATTTTCAAAGTTCTGCAGAATCTTTGTCTTCCAAACATGATGttataaagaattaaaataataatgataaaatattaatgtttgttatttaaaaaaatatttacaaaaagataaaaaatattacaattcatGAACAAATTTGATTCTAAAACGATGTGCTGTATCACTGCGTctttgcctctctctccctctctctgtcaatctctctgtctcagtgtggCAGGAGAGAGAgagagaaagaagagTGAGAgtagagacagagatgcagaATAATTGTTAGaatcaataatttatttcttttaaaaatgaataaataaatatactatgATATAATACATGAAGACtttgaacaaatatatttaatgagataaaaaaaaataatttcagatgTTACACATATGATTTGAATTTCAATATATAGAAGGGTATGTacgtatatgtatgtatgtatattgtagGATAACTGTTTTCAGCTGAGGTACATGAATGGGGATTTAAACTGCATCATAATTCTAGCTGATGTTCTCAGAAATAAACAGTAATATTCTGGATTAgtgtctgtgtctccctctctctcgctctctctctgacagcagCATTCTCTATCTGAGTCACTCTCATTCTCTCTGTGAGtgtctattctctctctctcaatttttctatttcattttaaggtgttttattggcatgactaacaAATTCTTAGTGTTGACAAAgcttttaaacattacatacatatgtagcgtaagg

Function

symbol description
shank1 Predicted to be located in cytoplasm. Orthologous to human SHANK1 (SH3 and multiple ankyrin repeat domains 1).

NR:

description
PREDICTED: SH3 and multiple ankyrin repeat domains protein 1-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008986 False 345 mRNA 0.57 2 16746687 16748393
TU66402 True 3119 lncRNA 0.41 3 16746687 16750798

Neighbor

gene id symbol gene type direction distance location
AMCG00008984 NA coding upstream 75257 16659992 ~ 16671430 (+)
AMCG00008982 NA coding upstream 144443 16599660 ~ 16602244 (+)
AMCG00008979 NA coding upstream 182452 16561022 ~ 16564235 (+)
AMCG00008981 NA coding upstream 187729 16547617 ~ 16558958 (+)
AMCG00008978 LOC108432681,LOC102199411,LOC102296518 coding upstream 295436 16430817 ~ 16451251 (+)
AMCG00008991 NA coding downstream 47276 16798074 ~ 16798529 (+)
AMCG00008990 NA coding downstream 48801 16799599 ~ 16842718 (+)
AMCG00008993 NA coding downstream 410287 17161085 ~ 17161541 (+)
AMCG00008996 NA coding downstream 672648 17423446 ~ 17453217 (+)
AMCG00008997 NA coding downstream 741683 17492481 ~ 17601018 (+)
G53025 LOC100846954,LOC107575789 non-coding upstream 91764 16654193 ~ 16654923 (+)
G52946 NA non-coding upstream 350206 16396280 ~ 16396481 (+)
G52945 NA non-coding upstream 377273 16369172 ~ 16369414 (+)
G52933 NA non-coding upstream 402009 16344256 ~ 16344678 (+)
G52931 NA non-coding upstream 402611 16343016 ~ 16344076 (+)
G53069 NA non-coding downstream 84814 16835612 ~ 16858245 (+)
G53115 NA non-coding downstream 207715 16958513 ~ 16959031 (+)
G53128 NA non-coding downstream 258724 17009522 ~ 17009721 (+)
G53131 NA non-coding downstream 268887 17019685 ~ 17019964 (+)
G53137 NA non-coding downstream 296216 17047014 ~ 17048098 (+)
AMCG00008988 shank1,LOC108427331,LOC103392692 other upstream 9188 16731389 ~ 16737499 (+)
AMCG00008985 NA other upstream 20392 16679825 ~ 16726295 (+)
G53028 NA other upstream 73145 16672503 ~ 16673542 (+)
AMCG00008983 NA other upstream 159306 16579863 ~ 16587381 (+)
G52942 NA other upstream 384176 16362102 ~ 16362511 (+)
AMCG00008995 NA other downstream 580094 17330892 ~ 17343676 (+)
G53298 mybpc2 other downstream 978568 17729366 ~ 17730660 (+)
AMCG00009009 NA other downstream 1166750 17917548 ~ 17920592 (+)
G53520 NA other downstream 1799974 18550772 ~ 18553960 (+)
AMCG00009022 dnajc19,LOC107727073 other downstream 2777099 19527897 ~ 19547507 (+)

Expression


Co-expression Network