AMCG00009009


Basic Information

Item Value
gene id AMCG00009009
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 17917548 ~ 17920592 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009009
GCTCAACTACCCTGTTACTCAGAAGCAGTTCAGTTTTCAATTGCCTAAGGGAGCTGTCAGTCAGTCGGAGAATGTCCGGGCTGACCAATCAGGAATGGGtgggagagggaagagaggggtCCTCCGCGACAGGGTCACTGAGATAGATAgggagaaagaaacagaaaaataaatagagaaataaccagggaatatatatatatatatattattgctgTTTCAAATAACTGCGACACCAGCTACACACAGCTCGAGCTGTGCACCGGGAGGTATCCGTAGGCCGACGTGGTGCAGCATTGGATAGACAATAAACACAGGGGGAGAGACGAAACACGGAGGCAGGGAGACCTGTCTGCACCGTCACCTTGCCGTATATAGAGGATGTCAGGGATGTGTGCAGGAGGGTCGGGGGGGTCAAGGACGTCAGTCACTCGCTGGGTGATTTCAGATGATGGGAGTCAGTTGATTCGTCGAGAGGAACTGGAGGGGGAGTTAGGTGTGGATTCAGAGACTCAGGCTGTCATTGTGAAAGAAGAGATGATGGAACAGCCAGTCACCCCCTCCAGGAACAtgcagAGGGAGGTGCCAGTCTCGTACCCATGTCCATACTGTGAGATCTGCTTCACAGCGCTGCACTACCTGGAGAAACACATCAAGCGCTCGCACAGGAAGCAGTACCTGGATATGCTGCGTAGCCGAGCAGTTACCTTTCAGAAACCTGTGGCCTCCTCCTCGTCTTCCCCGTCCCCCTCACtacccctctcctcctcctcttccttcccaTTGGCAACACCACCTGCCACTCACCCTTCCACTGGCCAATCGCGACTGCCCCCAAAACTCAAGCCTTCCTGCCACCTCCCCTTCTCAGGCTCTGCCCCTCCCACTTCCACTCCTCTACTCAATGCCCATGATGTGGACCTGAGTGGAGGAGGAAGCAGCAACAACCATGAGGGGAAACAGGTAGTGGAAGACGGGAAGGAGGAAGTGGAATTCCAGCAAGACAATGTAGATGAGAttaaggaggaggagggaatgGAGAGGGTGATCgtgggaggaggaggtgaagggagagaggaggaggaggaggaggaggaggaggagggcggcGAGGTTGAGGGCGAGGGCGAGAAGGGAGGGGATGGGAACACGAGAGAGactgaagaggaggaggaggaggaggaggaggaggcagaggacaATGGCGACACCCTCTACCTCTGTGCTGAG
>TU66780
gtCCTCCGCGACAGGGTCACTGAGATAGATAgggagaaagaaacagaaaaataaatagagaaataaccagggaatatatatatatatatattattgctgTTTCAAATAACTGCGACACCAGCTACACACAGCTCGAGCTGTGCACCGGGAGGTATCCGTAGGCCGACGTGGTGCAGCATTGGATAGACAATAAACACAGGGGGAGAGACGAAACACGGAGGCAGGGAGACCTGTCTGCACCGTCACCTTGCCGTATATAGAGGATGTCAGGGATGTGTGCAGGAGGGTCGGGGGGGTCAAGGACGTCAGTCACTCGCTGGGTGATTTCAGATGATGGGAGTCAGTTGATTCGTCGAGAGGAACTGGAGGGGGAGTTAGGTGTGGATTCAGAGACTCAGGCTGTCATTGTGAAAGAAGAGATGATGGAACAGCCAGTCACCCCCTCCAGGAACAtgcagAGGGAGGTGCCAGTCTCGTACCCATGTCCATACTGTGAGATCTGCTTCACAGCGCTGCACTACCTGGAGAAACACATCAAGCGCTCGCACAGGAAGCAGTACCTGGATATGCTGCGTAGCCGAGCAGTTACCTTTCAGAAACCTGTGGCCTCCTCCTCGTCTTCCCCGTCCCCCTCACtacccctctcctcctcctcttccttcccaTTGGCAACACCACCTGCCACTCACCCTTCCACTGGCCAATCGCGACTGCCCCCAAAACTCAAGCCTTCCTGCCACCTCCCCTTCTCAGGCTCTGCCCCTCCCACTTCCACTCCTCTACTGTCCTCACCTGCTTCCTGGGCCCCGCCCTCCCACCTCAGAGCCAAGCCCTCCCCCCGCAGCAGTAGTCGACCAATGGCAGCTAGTTCCCATCCCTCggtccctccccctccctctttaGCCACTGCTCAGAGTCACAGTACCAGCTtgaagggggagggagagaaggatggagaaggggaggggggaggaggaggagatgtgATGCTTAAACTGCCAcgcccccctccctctctcctctctgacCCCCTTAAAACAACAGatccctccttttctctctccctctcttccctctctccctcctgtgcTCACTGTGGGGGACTGCGCCTGGTGAATggacaggaggaagagagaggaggggaggaagAAGGGG

Function

GO: NA

KEGG:

id description
ko03460 Fanconi anemia pathway

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009009 True 1230 mRNA 0.55 5 17917548 17920592
TU66780 False 1155 TUCP 0.56 4 17917666 17920053

Neighbor

gene id symbol gene type direction distance location
AMCG00009007 NA coding upstream 1852 17899078 ~ 17915696 (+)
AMCG00009002 LOC103358380 coding upstream 48590 17863809 ~ 17868958 (+)
AMCG00009004 med25,LOC106601541,LOC106601511 coding upstream 71880 17831943 ~ 17845668 (+)
AMCG00009005 NA coding upstream 88165 17819600 ~ 17829383 (+)
AMCG00009003 NA coding upstream 121251 17788520 ~ 17796297 (+)
AMCG00009010 NA coding downstream 55442 17976034 ~ 18004741 (+)
AMCG00009008 NA coding downstream 93114 18013706 ~ 18022319 (+)
AMCG00009006 ect2,LOC107593151 coding downstream 116202 18036794 ~ 18040961 (+)
AMCG00009014 NA coding downstream 298480 18219072 ~ 18220253 (+)
AMCG00009016 rfc4,LOC103355474 coding downstream 440934 18361526 ~ 18374268 (+)
G53366 NA non-coding upstream 32861 17884481 ~ 17884687 (+)
G53358 NA non-coding upstream 42893 17872802 ~ 17874655 (+)
G53353 NA non-coding upstream 44881 17871429 ~ 17872667 (+)
G53354 NA non-coding upstream 46482 17870507 ~ 17871066 (+)
G53352 NA non-coding upstream 47081 17868996 ~ 17870467 (+)
G53406 NA non-coding downstream 157079 18077671 ~ 18077878 (+)
G53409 NA non-coding downstream 163212 18083804 ~ 18084038 (+)
G53410 NA non-coding downstream 163726 18084318 ~ 18084530 (+)
G53414 NA non-coding downstream 175638 18096230 ~ 18098551 (+)
G53415 NA non-coding downstream 178424 18099016 ~ 18099647 (+)
G53298 mybpc2 other upstream 186888 17729366 ~ 17730660 (+)
AMCG00008995 NA other upstream 573872 17330892 ~ 17343676 (+)
AMCG00008986 shank1,LOC108427331 other upstream 1166750 16746687 ~ 16750798 (+)
AMCG00008988 shank1,LOC108427331,LOC103392692 other upstream 1180049 16731389 ~ 16737499 (+)
AMCG00008985 NA other upstream 1191253 16679825 ~ 16726295 (+)
G53520 NA other downstream 630180 18550772 ~ 18553960 (+)
AMCG00009022 dnajc19,LOC107727073 other downstream 1607305 19527897 ~ 19547507 (+)
AMCG00009033 nlgn1,LOC103399994,LOC102210587,LOC102311540 other downstream 2456203 20376795 ~ 20396356 (+)
G53911 NA other downstream 3247639 21168231 ~ 21168575 (+)
G53915 NA other downstream 3354019 21274611 ~ 21275354 (+)

Expression


Co-expression Network