AMCG00009016 (rfc4,LOC103355474)


Basic Information

Item Value
gene id AMCG00009016
gene name rfc4,LOC103355474
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 18361526 ~ 18374268 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009016
TAGACCAAAATGTGTTGATGAAGTGGCCTTTCAGGAGGACGTGGTTGCAGTACTAAAGCGGTCACTAGAGGGTGCTGATCTCCCTAACCTCCTGTTCTATGGCCCTCCTGGGACTGGAAAGACCTCCACCATCCTGGCTGCAGCCCGGGGGCTGTACGGTCCAGAGCTGTTTCGCCAGAGGGTGCTGGAGCTAAATGCCTCAGATGAGCGAGGGATCCAGGTGGTGCGAGAGAAAGTGAAGAACTTCGCCCAGCTGTCGGTGATGGGAACACGGGCCGATGGGAAGCCATGCCCCCCATTTAAGATCATCATCCTGGATGAGGCAGACTCCATGACCAGTGCGGCGCAGGCAGCTCTCCGGCGCACCATGGAGAAGGAGTCCAAGACCACACGCTTCTGCCTCATCTGCAACTACGTCAGCAGGATCATCGAGCCCCTCACGTCTCGCTGCTCCAAATTCCGCTTCAGGCCTCTGAATGATCAAATACAGGAACAACGGCTGCTGGAAATCTGTGAGAAAGAGAACCTGAAATACAACACAGAGGGTATCGGGGTGCTGGTCAAGGTGTCTGAGGGGGACCTAAGGAAAGCCATTACCTTCCTGCAGAGTGCTGCGCGCCTGACAGGAGGGCAGGAGATCACAGAGACCGTCATCACGGAGATTGCTGGGGTGGTTCCCTCCAAGATGATCGACAATCTGCTCCAAACATGTTACAAAAGCACCTTTGAAAAACTGGAAGTGTCCGTCAAGAACCTGATCAACGAGGGCTATGCAGCTATACAGGTCCTCAGCCAGCTGCATGACGCCGTGATCCTGAGAGACAGTCTGAGTGACCAGCAGACATCAGTGATCGTGGAGAAGATGGCGGAAGTGGACAAGTGTCTGTCTGACGGTGCTGATGAATACTTACAGGTGCTGGGGCTGTGCTCTGTGATCATGCAGCAGGCATCCCAGAGAAACTAACTGCAGTGTTAAACTATTCTGTGCTTGCTCTACTACAGCATTCTTTAAAACGCACAAAACATGGACCTTTATTTGTAAGTTGTAATACTCCTGATGggatacatatttaaaaaataaaacaattgtaaatttaaataaataaaaaaaaaaacttgatttgcattttgattatacattgtattgtcTGGATCCCCAATCAATTTTAAAGgcatcttcaaatcatttatcttagataagggtgtctgccaataaataatctTGTTTCAATAAGCCCTAGTTGTTTGATGTAATTGAGTGctggaataaataaaactg

Function

symbol description
rfc4 Predicted to enable ATP binding activity and DNA binding activity. Predicted to contribute to DNA clamp loader activity. Acts upstream of or within retina development in camera-type eye. Predicted to be part of DNA replication factor C complex. Predicted to be active in nucleus. Is expressed in alar plate midbrain region; immature eye; and nervous system. Orthologous to human RFC4 (replication factor C subunit 4).

NR:

description
PREDICTED: replication factor C subunit 4

GO:

id name namespace
GO:0006260 DNA replication biological_process
GO:0005524 ATP binding molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function
GO:0003677 DNA binding molecular_function

KEGG:

id description
K10755 RFC2_4; replication factor C subunit 2/4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009016 True 1279 mRNA 0.48 9 18361526 18374268

Neighbor

gene id symbol gene type direction distance location
AMCG00009014 NA coding upstream 141273 18219072 ~ 18220253 (+)
AMCG00009006 ect2,LOC107593151 coding upstream 320565 18036794 ~ 18040961 (+)
AMCG00009008 NA coding upstream 339207 18013706 ~ 18022319 (+)
AMCG00009010 NA coding upstream 356785 17976034 ~ 18004741 (+)
AMCG00009007 NA coding upstream 445830 17899078 ~ 17915696 (+)
AMCG00009026 LOC107550661,LOC107566880 coding downstream 1487010 19861278 ~ 19915906 (+)
AMCG00009025 atp11b coding downstream 1564808 19939076 ~ 19949435 (+)
AMCG00009032 NA coding downstream 1888807 20263075 ~ 20263866 (+)
AMCG00009034 nlgn1 coding downstream 2082189 20456457 ~ 20461014 (+)
AMCG00009035 nlgn1,LOC106584306 coding downstream 2311877 20686145 ~ 20692387 (+)
G53415 NA non-coding upstream 261879 18099016 ~ 18099647 (+)
G53414 NA non-coding upstream 262975 18096230 ~ 18098551 (+)
G53410 NA non-coding upstream 276996 18084318 ~ 18084530 (+)
G53409 NA non-coding upstream 277488 18083804 ~ 18084038 (+)
G53406 NA non-coding upstream 283648 18077671 ~ 18077878 (+)
G53454 NA non-coding downstream 14131 18388399 ~ 18389424 (+)
G53456 NA non-coding downstream 25094 18399362 ~ 18400842 (+)
G53458 eif4a2,LOC105889495,LOC107656867,LOC107568626,LOC108267852 non-coding downstream 27237 18401505 ~ 18402219 (+)
G53493 NA non-coding downstream 34658 18408926 ~ 18410130 (+)
G53495 NA non-coding downstream 46584 18420852 ~ 18472277 (+)
AMCG00009009 NA other upstream 440934 17917548 ~ 17920592 (+)
G53298 mybpc2 other upstream 630866 17729366 ~ 17730660 (+)
AMCG00008995 NA other upstream 1017850 17330892 ~ 17343676 (+)
AMCG00008986 shank1,LOC108427331 other upstream 1610728 16746687 ~ 16750798 (+)
AMCG00008988 shank1,LOC108427331,LOC103392692 other upstream 1624027 16731389 ~ 16737499 (+)
G53520 NA other downstream 176504 18550772 ~ 18553960 (+)
AMCG00009022 dnajc19,LOC107727073 other downstream 1153629 19527897 ~ 19547507 (+)
AMCG00009033 nlgn1,LOC103399994,LOC102210587,LOC102311540 other downstream 2002527 20376795 ~ 20396356 (+)
G53911 NA other downstream 2793963 21168231 ~ 21168575 (+)
G53915 NA other downstream 2900343 21274611 ~ 21275354 (+)

Expression


Co-expression Network