AMCG00009020


Basic Information

Item Value
gene id AMCG00009020
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 18472634 ~ 18473701 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009020
ACTATGACCCCACTATTGAAGACTCCTACACTAAGATCTCTTCTGTGGACGGAAGGCAAACCCGACTAGacaTGTCCAGCCAGCcactctgtcagtgtgtgtgtgtaaatactgtattaacTCCATCattgaccccccccccccctctctcactgTCAGTCCTGGACACAGCGGGGCAGGAGGAGTTTGGGGCAATGAGGGAGCAGTACATGCGATCAGGAGAGGGGGAA

Function

GO:

id name namespace
GO:0007219 Notch signaling pathway biological_process
GO:0045199 maintenance of epithelial cell apical/basal polarity biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009020 True 230 mRNA 0.53 3 18472634 18473701

Neighbor

gene id symbol gene type direction distance location
AMCG00009017 NA coding downstream 62512 18404514 ~ 18410122 (-)
AMCG00009019 eif4a2,LOC105889495,LOC107568626 coding downstream 70388 18396177 ~ 18402246 (-)
AMCG00009018 eif4a2,LOC107103884,LOC107593804 coding downstream 90243 18377434 ~ 18382391 (-)
AMCG00009011 LOC105011705,LOC106613920 coding downstream 184462 18272618 ~ 18288172 (-)
AMCG00009013 NA coding downstream 219632 18223847 ~ 18253002 (-)
AMCG00009021 sox2,LOC106584342,LOC107655276 coding upstream 786586 19260287 ~ 19261111 (-)
AMCG00009023 NA coding upstream 1249240 19722941 ~ 19728530 (-)
AMCG00009024 NA coding upstream 1265587 19739288 ~ 19739999 (-)
AMCG00009028 dcun1d1,LOC107656862,LOC107722250,LOC107568628 coding upstream 1497814 19971515 ~ 20010245 (-)
AMCG00009030 NA coding upstream 1635245 20108946 ~ 20110200 (-)
G53478 NA non-coding downstream 164635 18307437 ~ 18307999 (-)
G53428 NA non-coding downstream 340849 18131480 ~ 18131785 (-)
G53425 NA non-coding downstream 358996 18102722 ~ 18113638 (-)
G53411 NA non-coding downstream 388152 18084247 ~ 18084482 (-)
G53286 NA non-coding downstream 817426 17654125 ~ 17655208 (-)
G53543 NA non-coding upstream 128012 18601713 ~ 18601951 (-)
G53556 NA non-coding upstream 185650 18659351 ~ 18659633 (-)
G53568 NA non-coding upstream 248409 18722110 ~ 18722374 (-)
G53577 NA non-coding upstream 361435 18835136 ~ 18835373 (-)
G53613 NA non-coding upstream 653041 19126742 ~ 19127019 (-)
G53355 lrrc4b,LOC107677294,LOC107556667 other downstream 603938 17868386 ~ 17868696 (-)
AMCG00009001 NA other downstream 725591 17724719 ~ 17747043 (-)
AMCG00008989 prr12b,prr12,LOC107708947,LOC104948901,LOC108441158,LOC108273897,LOC107729421,LOC107658420 other downstream 1559335 16823795 ~ 16913299 (-)
G53017 NA other downstream 1858173 16613224 ~ 16614461 (-)
G52951 NA other downstream 2067508 16404710 ~ 16405126 (-)
AMCG00009029 NA other upstream 1487326 19961027 ~ 19970276 (-)
AMCG00009027 NA other upstream 1587823 20061524 ~ 20062179 (-)
G53809 NA other upstream 1706098 20179799 ~ 20271814 (-)
G54003 LOC107575789 other upstream 3709387 22183088 ~ 22183565 (-)
AMCG00009060 hltf other upstream 5351528 23825229 ~ 23863035 (-)

Expression


Co-expression Network