AMCG00009022 (dnajc19,LOC107727073)


Basic Information

Item Value
gene id AMCG00009022
gene name dnajc19,LOC107727073
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 19527897 ~ 19547507 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009022
GCTTTCAGTGGTGGATACTACAGAGGTGGATTTGAGCCAAAAATGACCAAGAGAGAGGCTGCACTAATTTTAGGAGTCAGtccCACTGCTAACAAACTGAAGATCAGGGAAGCACACAGAAAAATCATGGTACTGAATCACCCGGATAGAGGTGGATCCCCATATCTTGCAGCAAAAATTAATGAAGCCAAGGACTTACTTGATGGGCAAGCCAAGAAGTAGAGGAAGCCTATGGAATAACTTGGGATGGATGTGAAAGatcaagaacaaaacacaaagaagttGAAATTATTATCTGAGAtgtaactataataaaaaaaaaatgaagacatttgCATTCTGTTTGACCACCtgcttgttttgatttattatggtctgtggaaaagaaaaaacacctgtTTTGCACATAACCAAGG
>TU67100
CCGGCAGTAGGCAGAAGTTACCTTGTATTGTGCAAAACATGAAGTTAGCCTGATGTCCGCTCatacttaaaatgaaaacaactgtGATATATACCGTAGATAAGGGGAACACAATCTAGCGCAGAAGATGGCCAGTACTGTTGTAGCAGTTGGCTTAACAATAGCGGCTGCAGGATTTGCAGGCCGCTATGCTGTACAGGCAATGAAACGCATGGAACCTCAAGTGAAACAGGCTCTTCAAGGTCTACCGAAATCTtccCACTGCTAACAAACTGAAGATCAGGGAAGCACACAGAAAAATCATGGTACTGAATCACCCGGATAGAGGTGGATCCCCATATCTTGCAGCAAAAATTAATGAAGCCAAGGACTTACTTGATGGGCAAGCCAAGAAGTAGAGGAAGCCTATGGAATAACTTGGGATGGATGTGAAAGatcaagaacaaaacacaaagaagttGAAATTATTATCTGAGAtgtaactataataaaaaaaaaatgaagac

Function

symbol description
dnajc19 Predicted to enable ATPase activator activity. Predicted to be involved in protein import into mitochondrial matrix and regulation of cardiolipin metabolic process. Predicted to act upstream of or within protein transport. Predicted to be located in matrix side of mitochondrial inner membrane. Predicted to be part of PAM complex, Tim23 associated import motor. Is expressed in heart. Human ortholog(s) of this gene implicated in 3-methylglutaconic aciduria type 5. Orthologous to human DNAJC19 (DnaJ heat shock protein family (Hsp40) member C19).

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009022 False 416 mRNA 0.39 3 19544364 19547507
TU67100 True 506 lncRNA 0.42 5 19527897 19547421

Neighbor

gene id symbol gene type direction distance location
AMCG00009016 rfc4,LOC103355474 coding upstream 1153629 18361526 ~ 18374268 (+)
AMCG00009014 NA coding upstream 1307644 18219072 ~ 18220253 (+)
AMCG00009006 ect2,LOC107593151 coding upstream 1486936 18036794 ~ 18040961 (+)
AMCG00009008 NA coding upstream 1505578 18013706 ~ 18022319 (+)
AMCG00009010 NA coding upstream 1523156 17976034 ~ 18004741 (+)
AMCG00009026 LOC107550661,LOC107566880 coding downstream 313771 19861278 ~ 19915906 (+)
AMCG00009025 atp11b coding downstream 391569 19939076 ~ 19949435 (+)
AMCG00009032 NA coding downstream 715568 20263075 ~ 20263866 (+)
AMCG00009034 nlgn1 coding downstream 908950 20456457 ~ 20461014 (+)
AMCG00009035 nlgn1,LOC106584306 coding downstream 1138638 20686145 ~ 20692387 (+)
G53645 NA non-coding upstream 38613 19489083 ~ 19489284 (+)
G53631 NA non-coding upstream 176098 19351535 ~ 19351799 (+)
G53630 NA non-coding upstream 176436 19351253 ~ 19351461 (+)
G53627 LOC107575789 non-coding upstream 207613 19319781 ~ 19320284 (+)
G53585 LOC100846954 non-coding upstream 485152 18993885 ~ 19042745 (+)
G53663 NA non-coding downstream 29813 19577320 ~ 19577907 (+)
G53675 NA non-coding downstream 134467 19681974 ~ 19682227 (+)
G53695 NA non-coding downstream 273072 19820579 ~ 19820929 (+)
G53706 NA non-coding downstream 412066 19959573 ~ 19960355 (+)
G53711 LOC107656862,LOC107568628,LOC107722250,LOC107708830,LOC107578399,LOC107681826 non-coding downstream 436362 19983869 ~ 19985883 (+)
G53520 NA other upstream 973937 18550772 ~ 18553960 (+)
AMCG00009009 NA other upstream 1607305 17917548 ~ 17920592 (+)
G53298 mybpc2 other upstream 1797237 17729366 ~ 17730660 (+)
AMCG00008995 NA other upstream 2184221 17330892 ~ 17343676 (+)
AMCG00008986 shank1,LOC108427331 other upstream 2777099 16746687 ~ 16750798 (+)
AMCG00009033 nlgn1,LOC103399994,LOC102210587,LOC102311540 other downstream 829288 20376795 ~ 20396356 (+)
G53911 NA other downstream 1620724 21168231 ~ 21168575 (+)
G53915 NA other downstream 1727104 21274611 ~ 21275354 (+)
G53917 NA other downstream 1744734 21292241 ~ 21293901 (+)
G54263 NA other downstream 4335810 23883317 ~ 23975906 (+)

Expression


Co-expression Network