AMCG00009025 (atp11b)



Basic Information


Item Value
gene id AMCG00009025
gene name atp11b
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 19939076 ~ 19949435 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence


>AMCG00009025
CTGGCTCTGGAGACGCACTTCTGGACATGGGTGAATCACTTTGTGACATGGGGCTCCATCGTCTTCTACTTCATATTCTCCTTATTTTATGGGGGAATTATTTGGCCCTTCTTGCACACACAAGAcatgtattttgtctttgttcagCTGCTCTCCAGCGGCTCAGCCTGGTTTGCaatcatcatcattgtcattAGCTGCCTGTTCCCTGACGTCATCAAGAAGATATTTTATAGACAGGTCCAGCCCACCAACACACAGAAAGCACAGGCAAGTATCACTGGGTCCACCTCTATGTACTCCAACAGAGTTGCATTAGGTGACGACTTCATCGCTCTGCAGCCATTGTCCAGAGCCAAGAATCAGCTCGGGAAAATTAGGTAG

Function


symbol description
atp11b Predicted to enable ATP binding activity; ATPase-coupled intramembrane lipid transporter activity; and magnesium ion binding activity. Predicted to act upstream of or within phospholipid transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in head; inner ear; swim bladder; and ventricular system. Orthologous to human ATP11B (ATPase phospholipid transporting 11B (putative)).

NR:

description
PREDICTED: probable phospholipid-transporting ATPase IF isoform X3

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
AMCG00009025 True 384 mRNA 0.47 3 19939076 19949435

Neighbor


gene id symbol gene type direction distance location
AMCG00009026 LOC107550661,LOC107566880 coding upstream 23170 19861278 ~ 19915906 (+)
AMCG00009016 rfc4,LOC103355474 coding upstream 1564808 18361526 ~ 18374268 (+)
AMCG00009014 NA coding upstream 1718823 18219072 ~ 18220253 (+)
AMCG00009006 ect2,LOC107593151 coding upstream 1898115 18036794 ~ 18040961 (+)
AMCG00009008 NA coding upstream 1916757 18013706 ~ 18022319 (+)
AMCG00009032 NA coding downstream 313640 20263075 ~ 20263866 (+)
AMCG00009034 nlgn1 coding downstream 507022 20456457 ~ 20461014 (+)
AMCG00009035 nlgn1,LOC106584306 coding downstream 736710 20686145 ~ 20692387 (+)
AMCG00009038 NA coding downstream 1048463 20997898 ~ 21087025 (+)
AMCG00009042 NA coding downstream 2480905 22430340 ~ 22441467 (+)
G53695 NA non-coding upstream 118147 19820579 ~ 19820929 (+)
G53675 NA non-coding upstream 256849 19681974 ~ 19682227 (+)
G53663 NA non-coding upstream 361169 19577320 ~ 19577907 (+)
G53645 NA non-coding upstream 449792 19489083 ~ 19489284 (+)
G53631 NA non-coding upstream 587277 19351535 ~ 19351799 (+)
G53706 NA non-coding downstream 10138 19959573 ~ 19960355 (+)
G53711 LOC107656862,LOC107568628,LOC107722250,LOC107708830,LOC107578399,LOC107681826 non-coding downstream 34434 19983869 ~ 19985883 (+)
G53762 NA non-coding downstream 79859 20029294 ~ 20030004 (+)
G53764 NA non-coding downstream 80721 20030156 ~ 20030431 (+)
G53791 NA non-coding downstream 154345 20103780 ~ 20104000 (+)
AMCG00009022 dnajc19,LOC107727073 other upstream 391569 19527897 ~ 19547507 (+)
G53520 NA other upstream 1385116 18550772 ~ 18553960 (+)
AMCG00009009 NA other upstream 2018484 17917548 ~ 17920592 (+)
G53298 mybpc2 other upstream 2208416 17729366 ~ 17730660 (+)
AMCG00008995 NA other upstream 2595400 17330892 ~ 17343676 (+)
AMCG00009033 nlgn1,LOC103399994,LOC102210587,LOC102311540 other downstream 427360 20376795 ~ 20396356 (+)
G53911 NA other downstream 1218796 21168231 ~ 21168575 (+)
G53915 NA other downstream 1325176 21274611 ~ 21275354 (+)
G53917 NA other downstream 1342806 21292241 ~ 21293901 (+)
G54263 NA other downstream 3933882 23883317 ~ 23975906 (+)

Expression



Co-expression Network