AMCG00009028 (dcun1d1,LOC107656862,LOC107722250,LOC107568628)


Basic Information

Item Value
gene id AMCG00009028
gene name dcun1d1,LOC107656862,LOC107722250,LOC107568628
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 19971515 ~ 20010245 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009028
atggctgccaagggaGGGTCAAATGGTAACCCAGGGAGGTGCTGGGAAAGAGAGAGCAGTTCCAGTTCAAAGAACAAGCTGAAGTCCTCACAAAAGGATAAAGTTCGTCAGTTCGTGATCTTCACACAATCCAGTGAAAAGACTGCTGTGAGCTGTTTGTCACAGAATGACTGGAAATTAGATGTTGCCACTGACAATTTTTTCCAAAATCCAGAACTTTACATCCGAGAGAGCCTGAAGGGAATATTGGACAGGAAGAAGCTAGAGCAGCTCTACAATAGGTACAGAGATCCTCAAGATGATAACAAAATTGGTATAGATGGGATCCAGCAGTTCTGTGATGATCTTGGCCTTGATCCAGCTAGTATAAGTGTGCTGATTATTGCCTGGAAATTCAGAGCAGCAACGCAGTGCGAGTTCTCAAAACAGGAGTTTATGGATGGAATGAGTGAGCAAGGGTGTGACAATatagaaaaattaaaagcacagcTGCCAAAAATGGAACAAGAGTTAAAAGACCAAGGGAAGTTTAAGGATTTTTAtcagtttacatttaattttgcaaagaaCCCAGGACAGAAAGGATTAGATTTAGAAATGGCAATTGCATATTGGAATTTAGTACTTGCAGGAAGATTCAAATTCCTGGACCTGTGGAATAAATTTTTATTGGTGCTGGACAGTGATGTGGCCAATTTGCTTCTGCAGGTGTAA

Function

symbol description
dcun1d1 Predicted to enable cullin family protein binding activity; ubiquitin conjugating enzyme binding activity; and ubiquitin-like protein binding activity. Predicted to be involved in positive regulation of ubiquitin-protein transferase activity and protein neddylation. Predicted to be part of ubiquitin ligase complex. Orthologous to human DCUN1D1 (defective in cullin neddylation 1 domain containing 1).

NR:

description
PREDICTED: DCN1-like protein 1 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009028 True 714 mRNA 0.41 6 19971515 20010245

Neighbor

gene id symbol gene type direction distance location
AMCG00009024 NA coding downstream 231516 19739288 ~ 19739999 (-)
AMCG00009023 NA coding downstream 242985 19722941 ~ 19728530 (-)
AMCG00009021 sox2,LOC106584342,LOC107655276 coding downstream 710404 19260287 ~ 19261111 (-)
AMCG00009020 NA coding downstream 1497814 18472634 ~ 18473701 (-)
AMCG00009017 NA coding downstream 1561393 18404514 ~ 18410122 (-)
AMCG00009030 NA coding upstream 98701 20108946 ~ 20110200 (-)
AMCG00009031 NA coding upstream 137852 20148097 ~ 20150492 (-)
AMCG00009037 NA coding upstream 731046 20741291 ~ 20741486 (-)
AMCG00009036 NA coding upstream 731248 20741493 ~ 20742332 (-)
AMCG00009040 NA coding upstream 1284079 21294324 ~ 21295469 (-)
G53748 NA non-coding downstream 11161 19959573 ~ 19960354 (-)
G53746 NA non-coding downstream 13230 19956713 ~ 19958285 (-)
G53722 NA non-coding downstream 34073 19859819 ~ 19937442 (-)
G53668 NA non-coding downstream 349313 19621812 ~ 19622202 (-)
G53662 NA non-coding downstream 401455 19569823 ~ 19570060 (-)
G53776 NA non-coding upstream 58666 20068911 ~ 20070175 (-)
G53790 NA non-coding upstream 89502 20099747 ~ 20100015 (-)
G53849 LOC100846954 non-coding upstream 575743 20585988 ~ 20586203 (-)
G53899 NA non-coding upstream 1052828 21063073 ~ 21063351 (-)
G53916 NA non-coding upstream 1264485 21274730 ~ 21275341 (-)
AMCG00009029 NA other downstream 1239 19961027 ~ 19970276 (-)
G53355 lrrc4b,LOC107677294,LOC107556667 other downstream 2102819 17868386 ~ 17868696 (-)
AMCG00009001 NA other downstream 2224472 17724719 ~ 17747043 (-)
AMCG00008989 prr12b,prr12,LOC107708947,LOC104948901,LOC108441158,LOC108273897,LOC107729421,LOC107658420 other downstream 3058216 16823795 ~ 16913299 (-)
G53017 NA other downstream 3357054 16613224 ~ 16614461 (-)
AMCG00009027 NA other upstream 51279 20061524 ~ 20062179 (-)
G53809 NA other upstream 169554 20179799 ~ 20271814 (-)
G54003 LOC107575789 other upstream 2172843 22183088 ~ 22183565 (-)
AMCG00009060 hltf other upstream 3814984 23825229 ~ 23863035 (-)
G54544 NA other upstream 5143021 25153266 ~ 25156338 (-)

Expression


Co-expression Network