AMCG00009031


Basic Information

Item Value
gene id AMCG00009031
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 20148097 ~ 20150492 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009031
ACAATGACTCCAAGGCAGTTGCTCTGGGCTGCGTCAGTGCTCGTTGTAACGGCAATGGCAATGGCGATGGCAAAACCCACCCAGGAGAAGAAGGACCGGGTTCATCACAGAAATGACCTTAGCGACCGTCACCACGATGACGCTCATGGTTATGAGTATGACCATGAGGCCTTCCTGGGTAAGGAGGAGGCCAAGACCTTCGACCAGCTGACGCCCGAGGAGAGTCAAGATAGGCTGGGCAAGATCGTTGATCGCATCGATGCAGACAAAGATGGCTACATCACCCACTCAGAGCTGCGGGGCTGGATCAAGCACAGACAGCAGAGGTACATCGATGagaatgtaaacaaacactGGGCAGAGTATGACCTGGACAAGGATGGACGCGTGTCCTGGGAGGAGTACAAGAACACCACCTATGGGTACTACTTGGATGAGGAGTTTGAGGACATGAACGACAAGCACAGCTACAAGGCTATGTTGAGCCGGGATGAGCGCCGCTTCAAGATGGCGGACCGTGACGGCGACCTCATCGCCACCAAGGAG

Function

GO:

id name namespace
GO:0016458 gene silencing biological_process
GO:0031047 gene silencing by RNA biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009031 True 546 mRNA 0.55 3 20148097 20150492

Neighbor

gene id symbol gene type direction distance location
AMCG00009030 NA coding downstream 37897 20108946 ~ 20110200 (-)
AMCG00009028 dcun1d1,LOC107656862,LOC107722250,LOC107568628 coding downstream 137852 19971515 ~ 20010245 (-)
AMCG00009024 NA coding downstream 408098 19739288 ~ 19739999 (-)
AMCG00009023 NA coding downstream 419567 19722941 ~ 19728530 (-)
AMCG00009021 sox2,LOC106584342,LOC107655276 coding downstream 886986 19260287 ~ 19261111 (-)
AMCG00009037 NA coding upstream 590799 20741291 ~ 20741486 (-)
AMCG00009036 NA coding upstream 591001 20741493 ~ 20742332 (-)
AMCG00009040 NA coding upstream 1143832 21294324 ~ 21295469 (-)
AMCG00009039 NA coding upstream 1145051 21295543 ~ 21436422 (-)
AMCG00009041 tbl1xr1,LOC103376174,LOC106584305 coding upstream 1719120 21869612 ~ 22033107 (-)
G53790 NA non-coding downstream 48082 20099747 ~ 20100015 (-)
G53776 NA non-coding downstream 77922 20068911 ~ 20070175 (-)
G53752 NA non-coding downstream 142006 20005889 ~ 20006091 (-)
G53751 NA non-coding downstream 154845 19993033 ~ 19993252 (-)
G53748 NA non-coding downstream 187743 19959573 ~ 19960354 (-)
G53849 LOC100846954 non-coding upstream 435496 20585988 ~ 20586203 (-)
G53899 NA non-coding upstream 912581 21063073 ~ 21063351 (-)
G53916 NA non-coding upstream 1124238 21274730 ~ 21275341 (-)
G53918 NA non-coding upstream 1141983 21292475 ~ 21293901 (-)
G53953 NA non-coding upstream 1621154 21771646 ~ 21771991 (-)
AMCG00009027 NA other downstream 85918 20061524 ~ 20062179 (-)
AMCG00009029 NA other downstream 177821 19961027 ~ 19970276 (-)
G53355 lrrc4b,LOC107677294,LOC107556667 other downstream 2279401 17868386 ~ 17868696 (-)
AMCG00009001 NA other downstream 2401054 17724719 ~ 17747043 (-)
AMCG00008989 prr12b,prr12,LOC107708947,LOC104948901,LOC108441158,LOC108273897,LOC107729421,LOC107658420 other downstream 3234798 16823795 ~ 16913299 (-)
G53809 NA other upstream 29307 20179799 ~ 20271814 (-)
G54003 LOC107575789 other upstream 2032596 22183088 ~ 22183565 (-)
AMCG00009060 hltf other upstream 3674737 23825229 ~ 23863035 (-)
G54544 NA other upstream 5002774 25153266 ~ 25156338 (-)
AMCG00009100 NA other upstream 5023185 25173677 ~ 25176378 (-)

Expression


Co-expression Network