AMCG00009042


Basic Information

Item Value
gene id AMCG00009042
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 22430340 ~ 22441467 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009042
ATGCTGCGAGCATGGCTGACTGACCCATCTCTCCTAGGTCTTTCCAGCGGCCGGCTCAGAGTTCCTCGGACAATTTACCAGAAGATCCGGGAGTACGACCTTCTAGACAAGAGGAAGAGAGTGACAGCACtgaaggcaggagaggaccggGCTATCCTGCTGGGACTCACCATGATAGTGTTCTCCGTGATGATGTACTTCCTCCTGGGTATCACCATGGTGCGCTCCTACACAGACAGTGTCTGGACAGATGAGTCTAACTGCACTGTGCTCAACTCCAGCATTGTGTCCGAGATTAACTGCACATACAGCTGTGGTTCGGACTGCTGGAAAGGGTCAAAGTATCCTTGCCTGCAGGTGTTCGTTAGCCTCAATTCCTCTGGGAAGATTTTTCGCCTTTCCCACAATGAGGAGACACATGGCCTGAACCCTGAGTGTTTTTACGTTCCCAAATGCCGAAAGGACTACACTGTAGCACGCACTATAATAATGAACATTTCGGAGCGCCTGAAGTCACACCAGCAGTTCCCCTGCTACTACGACCCTGGAGAGAGGCAGGACATGGTGCTGCTGACCAGACTATATGGCCAGGGGGCAATCTTCCACTCACTCTTCTGGCCCTCTTGCATGCTGGTAGGAGGCACTCTCATCATCGCCATGGTGAAGCTCACTCAGTACCTGTCCATACTTTGTGAACAgatcaataaaatcaaaaggtgaaaggaaaaaataaggcataataaacaaaatcaatgaatacattcatttaaaaaacaaataaatgaaaagataaGATGCTCTTCACCAAAGAACCTTAAGGATTGACatggtttttgtttggttttgtgttttgtttcctttttttggtcTAAAATTATATGTTGCCAACTTCCTCCTTCCTCCATCAAGAAAAGGTTAAAagttatgattttttaatttagactCTCTTCAGTTCTGACAACATGCTCTCATTACACGGGGACTCTTCAAGGAAGGCCAAGACAGAACAGAACAGGACTGAAATTCTACTGCTGAATATACAAGAAAAAGCTATCTAACAAGgcaacaaacattttaaagactCTGACTTGTGATCAGCATtatcttctgttttatttattttttaagtaagcAACTGTTGTATTATGCCATGTAACCTTCCTCTGAAAGCAAATCTTACAGAAAGTTAGTGACAGGCAATGTTTCTGACCTATCATTGATCACAGGTTGCCACAATAATCTATCCACGTTCTGTTAACAGGACACAACGTTTTTGTTCAGGGTGGTCTACAAAGACTTTGATACCAAAGTATTCAGAAACTGTCTTTGAGTCACATGGTAGGAAATTAACATGTCAAGCTCCATCATGCAGGTTCAATCCCATTAAACACAGTGATATAAACGGGTTACTATTTTGCACTGGGAGGTATGCACTTTGTAGCTCTTCATTTTAAGAGGCTGGAAATGTCAACTTTACATGAAAGACGAAGTATGAATACACACTTTGTCTACACACTCCTAAAACAGTTACAAATCCCAACAGTCAGCACTGCCACCATAAAGGCCTGTTAACAAATAACCACTACCACAACCATTACTGACAAAGTATGAAAACTGGAATGTTGACAAATTTCCAGCACCCATCACTAAAGTATTACGGATAATTAGGTCTAATTCTTATCCCTACCCACAAAGAAGTGATTAAAACACTTGATTCTATAATTTGTTTCCCCACTATAAAATGCAGGTAAAGACAATTATGTGTTAATATACCCTGTGTTTCTGAAGCACAACATGAACTGCAACAGAGCAGTACAgcttattaatacaattaaaaagtcacTGTAATTGACATTTGTTTGTCTCAGTTTAATGTGAAACAgtacatgtttttcattctaCCAAATcatacacattacatttacGTCATCTGCTCCATTTTCACAAGTTACTGAATTAATtccaaagtatttatattttccaaaatgttcaTACAGATATATGAAATTATGACATGCTgcaataaaattattatttttttgttcttcattccATTTGATATACTGATGTACTTCACTTTGACTAAATTTCCAAGTGATGACAGCTTCCTGTTTGCTATCAGTCTCAAACCCCCcaaccacatacacacacacacctacctaACTGGAAGCTGCTGTCAAGTAATTGGGCTTGCAATGTGTTGCTGGAGCCTGGGTCTAAGTCTTGATTTTATCCCAGTCCAACTCTCTTGAACTTAGGTGACCGGGGTTATAACCACGGTAGCTTATCTGTGAAATAAATCCACCTAGTGACTTACTTTTATACTGATGCTCAATATATGAATACTtatgataaacaaaaataaagatatttgtattaaaatgtgttaatgtttcTAAAGACgtgcaatgttatttttattatttggtgttttgatttgtattttcttatggATCAAACAAGTGAAATGTCTTTCATGAAAATTAACATTACCCATTATTGTATGtcctcaaaacaaaaatgtatttaaagccaGAACCAGTAGTACAAAACTAGTTACCTACAAATGCTGTCTTTCCAGTGTTAGTTCAGGGgacatttttacaaaatcaaTGTAAGCCAAACAAGCATCATTAGATTGTTTTAAGTGCAAGGTTTGAAATGTAATGGGTTTCCCAAACACTGCTGTTAGTTAAGACTTTGATGAATAGCATCGTGAGTTCATGAGTGGTCTGGTGCAATCATACGAAAGTGTATcgtcagagagaaaaaaatagtgcattaacattgtgttatttcacagtaattattacattattacatattacatatgaGATAACATTGCATTATGTTGCaataatgaatgcattattaTGAATAACTTTGTCCTGAAATCAAC

Function

GO: NA

KEGG:

id description
K04938 KCNMB2; potassium large conductance calcium-activated channel subfamily M beta member 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009042 True 2899 mRNA 0.38 4 22430340 22441467

Neighbor

gene id symbol gene type direction distance location
AMCG00009038 NA coding upstream 1343315 20997898 ~ 21087025 (+)
AMCG00009035 nlgn1,LOC106584306 coding upstream 1737953 20686145 ~ 20692387 (+)
AMCG00009034 nlgn1 coding upstream 1969326 20456457 ~ 20461014 (+)
AMCG00009032 NA coding upstream 2166474 20263075 ~ 20263866 (+)
AMCG00009025 atp11b coding upstream 2480905 19939076 ~ 19949435 (+)
AMCG00009043 NA coding downstream 171885 22613352 ~ 22631352 (+)
AMCG00009049 trpc1 coding downstream 191250 22632717 ~ 22648476 (+)
AMCG00009050 u2surp coding downstream 228417 22669884 ~ 22686612 (+)
AMCG00009052 chst2 coding downstream 262719 22704186 ~ 22705397 (+)
AMCG00009053 LOC104937275,LOC102787465 coding downstream 409524 22850991 ~ 22854494 (+)
G54000 NA non-coding upstream 281914 22147871 ~ 22148426 (+)
G53995 NA non-coding upstream 324937 22105190 ~ 22105403 (+)
G53992 NA non-coding upstream 386285 22043544 ~ 22044055 (+)
G53989 NA non-coding upstream 399906 22030141 ~ 22030434 (+)
G53988 NA non-coding upstream 400775 22029225 ~ 22029565 (+)
G54030 NA non-coding downstream 78399 22519866 ~ 22528083 (+)
G54031 NA non-coding downstream 79589 22521056 ~ 22542762 (+)
G54032 NA non-coding downstream 93126 22534593 ~ 22603477 (+)
G54063 NA non-coding downstream 248471 22689938 ~ 22691180 (+)
G54101 NA non-coding downstream 265674 22707141 ~ 22707844 (+)
G53917 NA other upstream 1136439 21292241 ~ 21293901 (+)
G53915 NA other upstream 1154986 21274611 ~ 21275354 (+)
G53911 NA other upstream 1261765 21168231 ~ 21168575 (+)
AMCG00009033 nlgn1,LOC103399994,LOC102210587,LOC102311540 other upstream 2033984 20376795 ~ 20396356 (+)
AMCG00009022 dnajc19,LOC107727073 other upstream 2882833 19527897 ~ 19547507 (+)
G54263 NA other downstream 1441850 23883317 ~ 23975906 (+)
AMCG00009085 NA other downstream 2371151 24812618 ~ 24816534 (+)
AMCG00009088 LOC104966806,LOC108444346 other downstream 2456649 24898116 ~ 24917863 (+)
AMCG00009104 NA other downstream 3048244 25489711 ~ 25493573 (+)
AMCG00009108 NA other downstream 3143415 25584882 ~ 25587615 (+)

Expression


Co-expression Network