AMCG00009048 (pcolce2,pcolce2b,LOC107588030)


Basic Information

Item Value
gene id AMCG00009048
gene name pcolce2,pcolce2b,LOC107588030
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 22648694 ~ 22666185 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009048
TCCGCACCTCGACAATGAGGAGTACCATTTGCTGCATTTTAGGGCTGCTTCTGTGTACACGGGTCCCCGCACAGACTCCACAGAGAAGGACCGCTTTTACGTGCGGTGGAGAGTTCATCGGGGATTCTGGGATCATCGGTAGTGAGGGGTACCCTGGGGTGTACCCCCCAAATACCAAATGCGTTTGGAAAATTACGGTCCCTGAAGGGAAAGTGGCTGTTCTGAGATTTCGTTTCATTGATCTGGAAAGCGACAGCCTGTGCAGGTATGACTTTGTGGATGTGTACAGCGGGCAGGCAAATGGGCAGCGACTTGGCAGGTTCTGTGGGACTTTCAGACCAGGTGCCCTCATTTCCAGTAGCAACAAGATGTTGGTGCAGATGGTGTCCGATGCCAACACAGCTGGAAATGGCTTTATTGCCACATACTCTGCGGCTCAACCCAATGAAAGAGGGGAACAGTATTGTGGAGGTCGTTTAGACAAACCGTCTGGCTCCTTTAAGACACCTAACTGGCCTGAAAAGGATTACCCAGCAGGAGTTACCTGCTCTTGGCATATTGTGGCACCAAAACACCAGATTATTGAAGTTAAGTTTGAGAAATTTGACGTGGAGAGAGACAACTATTGTCGCTACGATTTTGTTGCCATTTTTAATGGGGGAGAAATCAATGATGCCAAGCGAATTGGGAAGTATTGTGGAGACAGCCCTCCTCCgCCAGTTTTCTCAGACGGAAACGAGCTTCTCATCCAGTTTCTGTCAGATTTAAGCTTGACAGCAGACGGCTTCATTGGTTACTACAAATTCAGGCCCAAAAAGTACCCCACAACTACGGCCCCTCCCACAACTACCACCACACAGGCCACTACCAGAGCAACAACATTAAAGTACTCAGCAGCCCTGTGCCAGCAGAAATGCAAGAGGAGTGGTACCCTTCACAGCAATTACTGTTCAAGCAACTTCGTGATAAGCGGCACTGTTATAACAGCAGTGACTCGTGGAGGTAGCATGTACGCCACCATCTCCATCATTAATGTTTATAAAGAGGGGAATTTGGCCATTCAACAGGCTGGAAAGAACATGAGCACCAAATTAGTCATTCTGTGCAAGAGGTGTCCTTTCATCAGACGAGGTTTGAATTACATCTTCATGGGCCAAGCAGATGAGGAAGGCCGTGGTAAAATCACACCAAATCACTTTGTCATGGCGTTCAAATCCAAGAATCAGAGGGGCCTGAACAGTCTGAAGAGCAAGCGCTGCTGAATGTGTGATTGTTGCCTCATCCACAATGCTGCTCTGAAGCTATTTTCAAAGAGCTGTGCTTCATCTCATCTCCTCAGCCTCTCTTGCTTCTGTCTAAGGGTATTACACATTGTGTGTTCATTAATGAACAGATACAACTTGGTTTCCCTAAACAAACTCATTTCAGTTCCTTGTTCACATTGTGTTTTGAGGTTGTTgagagtgtttttgttttcttgtatttctgAGAACAGTTTGTAACAAAAATAGTGGTCTGTGATTAGTTGGCCATGTGAATTTTATTGTTCGATCAGGACTAACCAAGCgaatccttaaaaaaacaaacacaaaagaagtGTGTACAAATGTGCTTTTTCAAATGAGGAACTGAAGTGAGACTGATGTGTTTCTGCAAAAAACAGCCAGACCTAACCTTACACAGTTTGGCTCTATATACTGAAGTCAATTTTTGTGAAGCAACGTTTCCAGACTAATCTCTGATTGTCTTATTTatgagattttctttttgtttttaagtggaAAGTGGGAAGTATTGTATGTGGTGATATAAAGTGCAAGAAAGTGTGCAgtgcaataatttaaaatatttcatttaaaacattttctctaGGATATTaagttgtttattatttgtaggTTTGTAATGTAAGTGAAGCCTGTTATGTCActtgttaaacaaaattcaTTTTCATAGTTAGTCAGagctgaaattatattttactgtgtaTGGAAGGAAAGCAAACCATCTTAGTGCTTTTAATAGAATACGTTTTCTTCTACGTGGCTTACTTTTTATGTCTTTGTAAtggaataatataatacatcaaatatattactttggaagtatttattttttatttaataaatatttgttcttcACAATAAAATtcacaacattatttatttggacACAAAA

Function

symbol description
pcolce2b Predicted to be located in extracellular region. Orthologous to human PCOLCE2 (procollagen C-endopeptidase enhancer 2).
pcolce2 Enables collagen binding activity; heparin binding activity; and peptidase activator activity. Predicted to be involved in positive regulation of peptidase activity. Predicted to act upstream of or within cellular response to leukemia inhibitory factor. Predicted to be located in extracellular region.

NR:

description
PREDICTED: procollagen C-endopeptidase enhancer 2

GO:

id name namespace
GO:0005576 extracellular region cellular_component

KEGG:

id description
K24361 PCOLCE; procollagen C-endopeptidase enhancer

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009048 True 2178 mRNA 0.41 9 22648694 22666185
Loading

Neighbor

gene id symbol gene type direction distance location
AMCG00009045 atr,LOC107677746,LOC107700496 coding downstream 41807 22559529 ~ 22606887 (-)
AMCG00009046 xrn1,LOC107563287,LOC107710613 coding downstream 91706 22540747 ~ 22556988 (-)
AMCG00009047 NA coding downstream 119430 22511192 ~ 22529264 (-)
AMCG00009044 LOC107578566 coding downstream 161893 22475354 ~ 22486801 (-)
AMCG00009041 tbl1xr1,LOC103376174,LOC106584305 coding downstream 615587 21869612 ~ 22033107 (-)
AMCG00009051 NA coding upstream 55697 22721882 ~ 22817993 (-)
AMCG00009054 plod2 coding upstream 712422 23378607 ~ 23402492 (-)
AMCG00009055 si:ch73-206p6.1,LOC107557560,LOC107679633,LOC107739143,LOC108272643 coding upstream 784360 23450545 ~ 23469100 (-)
AMCG00009057 zic4,LOC107588037,LOC101481722,LOC102208739,LOC100703503,LOC107757405,LOC107557562 coding upstream 979269 23645454 ~ 23656150 (-)
AMCG00009062 nck1b,nck1,LOC107734380,LOC107683484,LOC107713805,LOC107588047 coding upstream 1227909 23894094 ~ 23914458 (-)
G54078 NA non-coding downstream 18186 22629331 ~ 22630508 (-)
G54008 NA non-coding downstream 344801 22303608 ~ 22303893 (-)
G53999 NA non-coding downstream 501130 22147308 ~ 22147564 (-)
G53955 NA non-coding downstream 840083 21808284 ~ 21808611 (-)
G53953 NA non-coding downstream 876703 21771646 ~ 21771991 (-)
G54124 NA non-coding upstream 126827 22793012 ~ 22826612 (-)
G54139 NA non-coding upstream 310276 22976461 ~ 22976682 (-)
G54161 NA non-coding upstream 473270 23139455 ~ 23139692 (-)
G54167 LOC103376870 non-coding upstream 503254 23169439 ~ 23169829 (-)
G54168 NA non-coding upstream 514142 23180327 ~ 23191495 (-)
G54003 LOC107575789 other downstream 465129 22183088 ~ 22183565 (-)
G53809 NA other downstream 2376880 20179799 ~ 20271814 (-)
AMCG00009027 NA other downstream 2586515 20061524 ~ 20062179 (-)
AMCG00009029 NA other downstream 2678418 19961027 ~ 19970276 (-)
G53355 lrrc4b,LOC107677294,LOC107556667 other downstream 4779998 17868386 ~ 17868696 (-)
AMCG00009060 hltf other upstream 1159044 23825229 ~ 23863035 (-)
G54544 NA other upstream 2487081 25153266 ~ 25156338 (-)
AMCG00009100 NA other upstream 2507492 25173677 ~ 25176378 (-)
AMCG00009106 NA other upstream 2794421 25460606 ~ 25462690 (-)
AMCG00009105 NA other upstream 2863644 25529829 ~ 25531566 (-)

Expression

AMCG00009048(pcolce2,pcolce2b,LOC107588030) Expression in all Baseline Samples

Bar chart with 16 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 60.
End of interactive chart.

AMCG00009048(pcolce2,pcolce2b,LOC107588030) Expression in each Bioproject

Bar chart with 7 bars.
AMCG00009048(pcolce2,pcolce2b,LOC107588030) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 70.
End of interactive chart.

Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000070_00621764_00643105 PCOLCE2B, PCOLCE2 coding CI01000070 null 621764 ~ 643435 (+)