AMCG00009058


Basic Information

Item Value
gene id AMCG00009058
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 23816825 ~ 23825087 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009058
AGGAGCCATTCTGAGACCACAGCCAACATGAAGGTTCTTCTGTTCCTGCAGTTTGTTGCAGCCGCTTTGGCTGTACCCTCATCCACAAGATATGATGGGGATGTGGTTTATCGTCTGAAACCAGAAAACCAGGATCATGTTGAAATAATTAAAGAGCTGGCCAATAGCATTGAGGTTGACTTCTGGAGGCCAGAGAATATTGAGTTAGTCACTGCCAACTCACATGTGGACATCCACTTCAGTGCTGAACACTTTCTGCTTGTGAACAACCTTCTGCAACAAAGTGGAATGAAGCATGAAGTACTGATTGAGAATCTGCAGGAGGCAGTTGAGGGGCAGTTCAATGCTAAAGAGCGTTCAACTGAAATTTACAACTACGAAAAGTACAACAACTTGCAGCAGATTGAATCCTGGGTTGCCAATATGGCAGCTGCAAACCCCAGTCTGATAACAACATCCCAGATTGGAACAAGTTACGAGGGACGCAGAATGCACCTGCTCAAGCTGGGTAAACCTAGTAGCTCTCCTAAGCCTGCAATCTTCATGGACTGTGGAATTCATGCCAGAGAATGGATCTCTCCTGCTTTCTGTCAGTGGTTTGTTAAGGAGGCTTTAACAACATATGGAAGTGATTCTGCAATGACCAGTCTGCTGAATACCATGGATGTCTATGTCCTGCCAGTTCTTAATGTTGATGGCTATGACTACACTTGGACGAATAATAGGATGTGGAGGAAGACCCGGTCTAGGAAATCTGGCAGCTCATGCATTGGGGCTGATCCCAACAGGAACTTTGATGCAGGCTGGTGCAgaATTGGGGCTTCAACCAATCCCTGCAGTGACACTTACTGCGGTGCCAAACCAGAATCAGAGGTGGAGGTTAAGGCTGTTGCTGATTTCATTCGGAGAAATCTTTCCAGCATCAAGGCTTATATCACTGTCCATTCCTACTCCCAGCTGCTTCTCTTCCCCTACTCCTACACTACCGCACTGGCTCCAGACCATGAAGAACTGCTTCGGGTTGCCAAAGCAGCTGCAAATGCATTGACCAGCCTTTATGGAACTCAATACACTTCTGGGCCAGGAGCTGTGACTATCTACCCTGCTGCTGGTGGTTCAGACGACTGGGCATATGACCTGGGTGTCAAGTACTCTTATACCTTTGAACTGCGTGACACAGGACGTTACGGCTTCCTCCTCCCAGAATCTGAGATCAGGCCTACCTGTCAGGAAACAATGCTGGCTGTCAAATACATTGCCTCTTACGTTCAGAAAAATGCTTACTGAACAGGCTTAATGAAAttgcattacaataaataaagtaaaacgaCTCAATCAATCCTATCCTTAgattttactttctttctgtcattatgtatttaatctgtGAATTTACTACATGGTctgtcattatttaattatggaaATGCCTGAGACCAAAGTGGCTTGTAAAAAGAAGATTTGTCAATGGTTTTTAAATgggattgtgttttgttcactTTGATGCAACTGCTTCACCTACATTAAAGCAACATTCTTTGTAAGTCACATTGGAAAAAGGCATAAccaaactaataaataatatgactAAAATTGCTCGGAACTGAACCAATAAAACCAGTAAGGGAAATTgaatcataaatataaaaaacttaAACCTGGATCTATATGTGTAAGTCAGATTGTTCAGTGAAAGGGATTTTGAAGTGGtttccagttatttaaaaatgtatttgtagttGCTAGACTATGCCTCAGATAATTATattctgaatttaattattttattatatcaaattttaaaacatcacaagACATTTCTTCTTCAAGGCTATCTCAGTTCCCAGTACTCTTAAAGAAAGACACACTTCAGACAATGGGAAATATCTGGCTTTGGCAATCTGTtgggaaaatacatacatggaGAATGGAGAATTTGGTGGAAGACACAAGGCTTTCACTATAATTGATCTTTTCCATTCCTTTCATACTTTCATGTCAGAAccaaatgatttttttaaattgcttcttTTTGTGTTATAGATTCCTGGAGAAGAAAAGTCGATGCAACCTACTCAGGatgggttttaaaaacaaactctaATTATCTGTCCAGAATGTACCTGCCAAATATGTGTGAAAATATTCCTCTTAGAGATAATTGACAGTAGGCAGTTCCCCTGTTGACATAGTCCAGAGAAGGACTAAGCACTCTCCCTCTGCTAATGTATGAGAGCACAGTTcaggaaacatgtttttttatctggAAGGAACTCTTTAAGCCTTGAGTGCATTTAAgacatattcattatttaaaacttCAATCGAAATCCCTctattaaagcaaaacaaagcaaggATTCTAGTTATGTAACATTTAACTTGATGCATTCTGatatgattatgtatttatattgtgtaaaaACTATTCATATTAAATCCAGATCATcgaacattatattattattattattattattattagtagtagtagtagtagtagtagtagtagtagtagtagtagtagtatttaattGATTGTAATTGAGCCAGGGTAACTGAtccagtaataataaaaataatacaagtacaagTAGTCCAGTgtactttgtgtatttttgtttctggtcACTGGATGGCACCATTAAAACTAAGATGAAAATGGAATACGACTTTTTGTTTCAAACCAAACATCACAAGCTACGCATCAAGCAAAATATACATTGCACATGATTAGTTATAGATATCTGCAATTGTTTGGATACTAATAAGAACGTGGAGAACCTCTCCGGTATTTTGCAATGCAATTTGTGTCGGATTGAAAAgcgaagttgaagaaagtgaaaaataacagCATTATAGAGTGGCAGAGCAGCAAACACGATTAACATGACCTTGTAAATATCATGTCGGAAAACCAGATGTCACACTCATgcatttatacaaatgtatgtatttactgtttaataaaaaatg

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004181 metallocarboxypeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K01291 CPB1; carboxypeptidase B

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009058 True 2976 mRNA 0.38 11 23816825 23825087

Neighbor

gene id symbol gene type direction distance location
AMCG00009056 zic1 coding upstream 154612 23658201 ~ 23662213 (+)
AMCG00009053 LOC104937275,LOC102787465 coding upstream 962331 22850991 ~ 22854494 (+)
AMCG00009052 chst2 coding upstream 1111428 22704186 ~ 22705397 (+)
AMCG00009050 u2surp coding upstream 1130213 22669884 ~ 22686612 (+)
AMCG00009049 trpc1 coding upstream 1168349 22632717 ~ 22648476 (+)
AMCG00009059 NA coding downstream 135 23825222 ~ 23840982 (+)
AMCG00009061 NA coding downstream 47621 23872708 ~ 23885824 (+)
AMCG00009064 stag1a,stag1,LOC107722576,LOC107688487,LOC107709887,LOC107586054,LOC106575446 coding downstream 204305 24029392 ~ 24049944 (+)
AMCG00009066 NA coding downstream 238755 24063842 ~ 24071730 (+)
AMCG00009069 NA coding downstream 375270 24200357 ~ 24206521 (+)
G54238 NA non-coding upstream 152173 23664157 ~ 23664652 (+)
G54237 NA non-coding upstream 152731 23663393 ~ 23664094 (+)
G54194 NA non-coding upstream 367348 23447154 ~ 23449477 (+)
G54174 NA non-coding upstream 581796 23234623 ~ 23235029 (+)
G54166 NA non-coding upstream 625243 23169441 ~ 23191582 (+)
G54264 NA non-coding downstream 65040 23890127 ~ 23894287 (+)
G54328 NA non-coding downstream 340703 24165790 ~ 24166061 (+)
G54356 NA non-coding downstream 452818 24277905 ~ 24278561 (+)
G54430 NA non-coding downstream 958423 24783510 ~ 24787085 (+)
G54547 NA non-coding downstream 1346914 25172001 ~ 25172864 (+)
G53917 NA other upstream 2522924 21292241 ~ 21293901 (+)
G53915 NA other upstream 2541471 21274611 ~ 21275354 (+)
G53911 NA other upstream 2648250 21168231 ~ 21168575 (+)
AMCG00009033 nlgn1,LOC103399994,LOC102210587,LOC102311540 other upstream 3420469 20376795 ~ 20396356 (+)
AMCG00009022 dnajc19,LOC107727073 other upstream 4269318 19527897 ~ 19547507 (+)
G54263 NA other downstream 58230 23883317 ~ 23975906 (+)
AMCG00009085 NA other downstream 987531 24812618 ~ 24816534 (+)
AMCG00009088 LOC104966806,LOC108444346 other downstream 1073029 24898116 ~ 24917863 (+)
AMCG00009104 NA other downstream 1664624 25489711 ~ 25493573 (+)
AMCG00009108 NA other downstream 1759795 25584882 ~ 25587615 (+)

Expression


Co-expression Network