AMCG00009059


Basic Information

Item Value
gene id AMCG00009059
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 23825222 ~ 23840982 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009059
TGACAAGGGAGTATATAAAAATGGTCCTGCCTCCTACTATAAACCTACTGCTGAAGTATTAGTCTGTTTCTGACCAGAATAAAGTCTACTTGCTCCTGCGTCTGGGCTACAAAGTAGCTTTGACTCCAAACGAACCATGACAGATCAGGCCTTTGTAACTTTAGCCACAAATGACATCTATGGCAAAGGAGCCCTGGTGCTTGGCGTGTCATTGAGGAACCATAAAACGTCAAGACAACTGGTGGTGCTGATAACTCCTCAGGTCTCCCAGTCGATGAGgACAGTGCTTCAGAAGGTATTTGATGAAGTTATGCAGGTGGACGTGCTAGACAGTAAAGATTCGGCACATTTGACTCTGATGCAAAGGCCAGAGCTGGGTGTCACGTTGACTAAACTCCATTGCTGGACATTGACACAGTACTCTAAGTGTATTTTTATGGATGCAGACACACTGGTTTTGTCAAATATTGATGAGCTGTTTGAACGGAAAGAGTTGTCTGCAGCTCCAGACCCAGGCTGGCCTGACTGTTTCAATTCAGGAGTATTTGTCTTTAGTCCTTCCAATGAAACGTATGAAAAACTCATAAAGTTCTGCACTGAGAAGGGAAGCTTTGAcggagGGGACCAGGGGATTTTGAACAGCTTTTTTAGCAACTGGGCAACTGCAGACATATCCAAACATCTTCCCTTTATTTACAACCTAAGTAGCATCGCAATCTACTCCTACCTTCCAGCATTTAAGCAGTATGGTGCCAATGCCAAGGTGGTCCATTTCCTGGGTAAAGTTAAGCCATGGAATTATAGTTATGACTCCAAGACAAAAACTGTTCAAGGTGACTTCCAGGAGTCTTCCACACTCCATCCGAACTACCTGAACATGTGGTGGGAGATATTCTCCACCTCTGTCATCCCTCTGCTTACAGAGCAGGGTGTAATAAAGCCATCCGAGACTGGATGCAAAGCGGATGAAATAAGTGAGGGAGTGATGCACATTAACTTAaccccgcctcctcctcctcctcctcccatcaCCTCAGAGGAACGTAAGCAGAAGTGGGAACAGGGACAAGCGGACTACATGGGAGAGGACTCTTTTGATAATATACAGAAAAAGCTGGACTCCTTCCTAAAGTAAAAGATCGAGAAGATTTTGCAGTTGTACAGATTGATTTGAAAAGGGTATTAAAGCACATGCAGAACAGTCTATATTCTTTGCTTATGGACTGACTGGCTGAGTGACATTTAAAGAGGTTGAACATGTATATAAtgtggacattttgttttggtcccCTTCCCCTTTTCTCCCCGATTCTATTTACTGGTAGAGGATTCTCTTTTGCAAAGAGGCAAAGTCCTGATCAAAGTAACCAACCAATACCCTTTTAATGTAGCAAGTCTGACTTCTGCAATCTCTTTGGTAAAAACCTATGCCACTGAAGCAAGACCATGTAGAAATAACCAATTCAGGAAATTAGACTTCACTAAAGTTTAGCAATTCGCAAGTTTGACTGTTGCCTTAATGTGACTTACCCCTTGACCTATTTAATGCAATACAACACTTTTAAGAGTGTATCTGAGACCACTGTTCCTAACTCTGTATGctaaattatatattgaatGGCTTGCAATAACGATTGGTCAGGTGACTTATAATGAAATGTAGTTCAAACTTTTTTCCAAAACTGTTTCTGAAGTTGGCGATTTTAAGTTTTACAGAATGGCCTTCAACTCCCCCAACCACACATGTGGTATGCCAAGATACCTTGAGTGACAATGTGAACTCTCTAGAACctctttgtatatattttgcatgtttattaCTGAGCAGTTATAAAGGAAGCAGCACTTGACATTTAAACAACGACAAAACCCTTAGCTTTCCTGTAACTGTTTTAGGTGATGTTTCTCTTCTGTTGCCCCCTCCCCCCTAACCCTCACCAATCCTTAAGACCAGTGGGACAGACCCTGTTGCTGCCTTAGCTTAACTTCTTGTTTACAGAACATTTGACTGCTGCACTGACTGGCCGAGACTGTTGCTGTACCTTTCCAACTGTTTCATGCATGAACACTGTTGTGATCCCTTACAACCACAGGAACACTCCATGTTAGAAATGTTAAAGGCAGTTCAATCCTGTGCATACTACTGGCTCTGAAGTGTGAAGGTAATTTCAAGTTCACTACTGGGATAATTGAAATCCTTCATGTTTTCTGTACCATGGCACTttatctgcaaaataaaactagTGATGTGAgcctgtttatttgtattaattccaCCTGCCCTGCCTCTTTGTTTGTAGAGGGGCTCAAGTTGGTTATTTTAGGTTCTGCTAAATGGAAGGGAaccttgatttaattttataccCATCAGTTTCAGAATAGAGACTTACTATAGAACATAAATATTGGTCACTCTTCTAGAACTGATTTGACCCAATAGCCTTACctcttttataaatgtgtatgtatatagattactttgtgtaaaaacaaatgcttctagttttcagttttctctttcCCCCTCCCCTCGGCATTAACCTGGAGATGCAGGTAGTAACGCCAGAATGAATTTAAGTATGTGAGAACACTgatcaataatgtatttattaaaacttaaaatgttgCAGCCATAAGTAGGGGAGTGTGATTTCCAAGAGTCTAGAACCTGTTCATTTaagaccttttaaaatgttccttcaACTTGCAGATAGATGTGGGGGAGGTGGAACCTATGATCGTGTCTATGCAATGCAGCATTTTGGAAGGCAAACAATTGGGCATTGATAAAGGactgttcctttaaaaaaaaaaaaaaaaaaaaaaaa

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG:

id description
K00750 GYG1, GYG2; glycogenin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009059 True 2828 mRNA 0.41 7 23825222 23840982

Neighbor

gene id symbol gene type direction distance location
AMCG00009058 NA coding upstream 135 23816825 ~ 23825087 (+)
AMCG00009056 zic1 coding upstream 163009 23658201 ~ 23662213 (+)
AMCG00009053 LOC104937275,LOC102787465 coding upstream 970728 22850991 ~ 22854494 (+)
AMCG00009052 chst2 coding upstream 1119825 22704186 ~ 22705397 (+)
AMCG00009050 u2surp coding upstream 1138610 22669884 ~ 22686612 (+)
AMCG00009061 NA coding downstream 31726 23872708 ~ 23885824 (+)
AMCG00009064 stag1a,stag1,LOC107722576,LOC107688487,LOC107709887,LOC107586054,LOC106575446 coding downstream 188410 24029392 ~ 24049944 (+)
AMCG00009066 NA coding downstream 222860 24063842 ~ 24071730 (+)
AMCG00009069 NA coding downstream 359375 24200357 ~ 24206521 (+)
AMCG00009070 NA coding downstream 371434 24212416 ~ 24216847 (+)
G54238 NA non-coding upstream 160570 23664157 ~ 23664652 (+)
G54237 NA non-coding upstream 161128 23663393 ~ 23664094 (+)
G54194 NA non-coding upstream 375745 23447154 ~ 23449477 (+)
G54174 NA non-coding upstream 590193 23234623 ~ 23235029 (+)
G54166 NA non-coding upstream 633640 23169441 ~ 23191582 (+)
G54264 NA non-coding downstream 49145 23890127 ~ 23894287 (+)
G54328 NA non-coding downstream 324808 24165790 ~ 24166061 (+)
G54356 NA non-coding downstream 436923 24277905 ~ 24278561 (+)
G54430 NA non-coding downstream 942528 24783510 ~ 24787085 (+)
G54547 NA non-coding downstream 1331019 25172001 ~ 25172864 (+)
G53917 NA other upstream 2531321 21292241 ~ 21293901 (+)
G53915 NA other upstream 2549868 21274611 ~ 21275354 (+)
G53911 NA other upstream 2656647 21168231 ~ 21168575 (+)
AMCG00009033 nlgn1,LOC103399994,LOC102210587,LOC102311540 other upstream 3428866 20376795 ~ 20396356 (+)
AMCG00009022 dnajc19,LOC107727073 other upstream 4277715 19527897 ~ 19547507 (+)
G54263 NA other downstream 42335 23883317 ~ 23975906 (+)
AMCG00009085 NA other downstream 971636 24812618 ~ 24816534 (+)
AMCG00009088 LOC104966806,LOC108444346 other downstream 1057134 24898116 ~ 24917863 (+)
AMCG00009104 NA other downstream 1648729 25489711 ~ 25493573 (+)
AMCG00009108 NA other downstream 1743900 25584882 ~ 25587615 (+)

Expression


Co-expression Network