AMCG00009061


Basic Information

Item Value
gene id AMCG00009061
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 23872708 ~ 23885824 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009061
GCGCTGTGAGAGGGGGGAAGGTCATATTGTTTTAACACTAGTAGTAGTGTGCTACTGATTGAGAGCAACACAGCTGAAGTTTTTCCACAAGAAAAGATGACTCCCTTTCCTTTTATTAAAATGGcgtttctcctgttttctttttctttgacttTAGTTTTAGGGTTCGGGCTCCCTGAAGCACTAAATGCTGTTGCTAGAAACTGCGGATTTACAGAAGCTAGCGTAACGCACGGCATCGTTCTGGTGTATCTAATGTTCGTCTGTTGTGTGGCAGTGCCTTCCATTCCAAGAGGGTCTTTGAAAACTGAGGGAAAGGCAGTCTTCATCACAGGTTGCGATAGTGGATTTGGATTTGCTTTGGCAAAGCATCTACATGCACTGGGATTCACAGTGTTTGCAGGATGCCTTCTCAAGGATAAGAGTGGGACAGGAGCATGTGACCTGGAGAGTATGAAGTCAGACAGGATGAGAGTGGTGCAGCTGGATGTGTGCAGCGAGGAAGTGGTTAATCAGGCTGTGCAGTTTGTCAGGGAAAACTTAAAGGATCCAGAGAACGGTCTGTGGGCACTGGTCAACAATGCTGGAGTCTCAACCTTTGGAGAGGTAGAGTTCACAAGCATGGAAACATACAAGCAGGTTACAGAGGTGAATCTGTGGGGCACTATCAGAGTAACAAAAGCCTTTCTTCCCCTGATCCGGAGAGCTAAAGGGCGAGTGATTAACCTCGCCAGCATGTACGGAAGAATGAGCAACGCCCTTCGCTCCCCATACTGTGTGTCCAAGTATGGCGTGGAAGCCTTTTCCGATTGCCTGCGCTACGAGATGCGAAAATGGGGTGTCAAGGTCATTGTCATTGAGCCTGGCAACTTCATCGTGGCCACGGGCATCCTCACACGTGACATTGTCTCCACCACAGCTGACAAACTGTGGAGAGAGGCACCCAAAGTGGTGCAGGAGGATTATGGGAAGGCCCACTTCGATCGCCACATTGCAGTGGTTAAGTCTTACTGTAACAGTGGCCAGAGGGACACAACACCCGTTATCCAGGACATCTCTGACGCCATCATGTCCTGCCACCCCTTCACTCGCTACAACCCCATGGAAGCATACTGGTGGATTCGTATGCAGATGATGACCCATCTTCCGGCTGCTATTTCCGACaagctgtatttttaaagccaGGGAATCTTTCGTAGCCACAGATACACTGAGATTATAGCAGAGCATCGGTGCTGTATGATGTAACGGTCACATATCGTAACCTACTTCCACACAAACAActttaaaggtgtttttttttttttttttttcccattcacCTACAGATCATAAAATGCTTACAAGCTTTTCTTACAGGATGCCATTTATAATACCAGTCATTTTTAGCCTGTTATAAATCAGTTTAACTAAGCACTTTGTGCACGTGTCACAGTATGAAACAGAAACCAAGAAAATGCCCCTTGCCAGCCAGTGTAATTTCTCAATAAATTTATTAGATTGTCCAGCTCTAATAAATGGTTAAAGCATTCAAATCAGACTGTTTATGTTGGCATGGTTATTATTTCATATGGTCATATTATGAgcccatttatttttctggcatTTGGTGGGCACTTTCCAGTAAAGGGAACCTCAGAATAGCTACAGCTCCCTGTGGGTACATTATTGTGCTTACTagaataaaatgcttttgaCAGCAGTGAGAGAAGCACATCGATTTGCtgcctgctgtgtgttttgttgttgtttttgttagtccaagaaaaaaaaaaaatactaaaatgccCCATAGAAATAGTTTGCATCTTAAAGCTATAACTGGATCAAACAGTATTTAGTCTTATTTGTGATTGGTGTTTAACAAAGTAGGCTGTTTTGTtagttatatataatttgtaattcaatatttaaccTCACCAAGAAATAATTTTAACCATATTGATATAATGATTATCCAGCACACAAATTGGGATACTGGGAATGCAAGAtcagtaaaatgtatacagCATTTCtaatccaaaatgttttttgcaaTGTTCTTTTGAATATAGCAGACCAAGCAACAAATTCGGAacatttttaatctaatttactACACTGTCagttcaaagaaaacaaaaagctgtagATTTAAAGGTACTAAAATTGCAAAGACACCATCTCCCTCCTTCACCCTTCCCAGTATAAACTGACACTGAAACCATAAatgttcattaaaat

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K00019 E1.1.1.30, bdh; 3-hydroxybutyrate dehydrogenase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009061 True 2223 mRNA 0.42 5 23872708 23885824

Neighbor

gene id symbol gene type direction distance location
AMCG00009059 NA coding upstream 31726 23825222 ~ 23840982 (+)
AMCG00009058 NA coding upstream 47621 23816825 ~ 23825087 (+)
AMCG00009056 zic1 coding upstream 210495 23658201 ~ 23662213 (+)
AMCG00009053 LOC104937275,LOC102787465 coding upstream 1018214 22850991 ~ 22854494 (+)
AMCG00009052 chst2 coding upstream 1167311 22704186 ~ 22705397 (+)
AMCG00009064 stag1a,stag1,LOC107722576,LOC107688487,LOC107709887,LOC107586054,LOC106575446 coding downstream 143568 24029392 ~ 24049944 (+)
AMCG00009066 NA coding downstream 178018 24063842 ~ 24071730 (+)
AMCG00009069 NA coding downstream 314533 24200357 ~ 24206521 (+)
AMCG00009070 NA coding downstream 326592 24212416 ~ 24216847 (+)
AMCG00009072 ghsra,LOC107732507,LOC107680230,LOC107550603,LOC107586567,LOC107688542 coding downstream 332980 24218804 ~ 24221967 (+)
G54238 NA non-coding upstream 208056 23664157 ~ 23664652 (+)
G54237 NA non-coding upstream 208614 23663393 ~ 23664094 (+)
G54194 NA non-coding upstream 423231 23447154 ~ 23449477 (+)
G54174 NA non-coding upstream 637679 23234623 ~ 23235029 (+)
G54166 NA non-coding upstream 681126 23169441 ~ 23191582 (+)
G54264 NA non-coding downstream 4303 23890127 ~ 23894287 (+)
G54328 NA non-coding downstream 279966 24165790 ~ 24166061 (+)
G54356 NA non-coding downstream 392081 24277905 ~ 24278561 (+)
G54430 NA non-coding downstream 897686 24783510 ~ 24787085 (+)
G54547 NA non-coding downstream 1286177 25172001 ~ 25172864 (+)
G53917 NA other upstream 2578807 21292241 ~ 21293901 (+)
G53915 NA other upstream 2597354 21274611 ~ 21275354 (+)
G53911 NA other upstream 2704133 21168231 ~ 21168575 (+)
AMCG00009033 nlgn1,LOC103399994,LOC102210587,LOC102311540 other upstream 3476352 20376795 ~ 20396356 (+)
AMCG00009022 dnajc19,LOC107727073 other upstream 4325201 19527897 ~ 19547507 (+)
AMCG00009085 NA other downstream 926794 24812618 ~ 24816534 (+)
AMCG00009088 LOC104966806,LOC108444346 other downstream 1012292 24898116 ~ 24917863 (+)
AMCG00009104 NA other downstream 1603887 25489711 ~ 25493573 (+)
AMCG00009108 NA other downstream 1699058 25584882 ~ 25587615 (+)
AMCG00009129 NA other downstream 2907713 26793537 ~ 26796768 (+)

Expression


Co-expression Network