AMCG00009065 (pccb,LOC106574468,LOC107688488,LOC107709888)


Basic Information

Item Value
gene id AMCG00009065
gene name pccb,LOC106574468,LOC107688488,LOC107709888
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 24051750 ~ 24062621 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009065
GAAACGTTCAGCATATCAAATCGTACTTCCTTCCTGGTCATGTTATTTGTACCCATAAGGTGTGCATTGGTACATGTATTACAGTACTGCCTCCcgttgaaacaatgttattcggTGATTCATTAACTGAATCCTTAactaaacataattattatattttcagagtttaaaTGCTACATTATATTCACTTTGTTATTGCAGCCTAGATAAATATATCTAAATCCAGATCAACATTCCAGTTGGGTTAACTGAGTCAATTGATGCATATCTATTgataaaaagatgaaaaaacaacaatatggtAATGCATGATGATAAAGTAAGGACCCTGACCAGTCGTGCAGGTCTCCCTCAACCAAACCTCTTTGCAGCTTGCGCTTTGCATAATCGGATTGCGTTCGTTGCGCAGATTTCAGCAGATCTGCACCTCTGAACCAATAATATTACAAGCAAAgagcagatctgtgcaaaacagCGGGAATCTGCACGACCCTACTGCGCTGTCGACCGTCCAGATTTGTTCCGCCGAGAGAAGAGAAGGAGCCGATTGGTTGAGACAGAGAAACCCCTTAGCCAATTGGAAAGGACTAAGTTGCAGGGTTACAACCATGGCGGCCTTCACTGTAGCGAGCCGCGGCTGTAGGTTGCTTTGCGGATTCAGATCCCTGTACAAGAAATTCCCACCGAGCCATGGAGGCGCCGTGGCCTCGGCCCGATCAGAGCTGCGGTGCCTGCCTCGACTGTACTCTGTCGGCCACGTTTCTGTGCAAGAACGGATAGACAACAAACGCAAGGCAGCGCTAATTGGAGGAGGTCAGAACCGAATAGACGCACAGCACAAGAGGGGGAAGCTGACAGCTCGAGAGCGGGTTGAGCTGCTGTTGGATCCAGACACCTTTGTGGAATATGACATGTTTGTGGAGCACAGGTGTTCAGACTTCGGGATGGAAGCTGATCACAATAAGTATCCCGGGGACAGTGTGGTGACTGGACAGGGCCGCATCAATGGGAGGCTGGTGTACATCTTCAGCCAGGATTTCACTGTGTTTGGAGGCAGCCTGTCTGGAGCTCATGCACAGAAGATCTGTAAGATCATGGACCAGGCAATGATGGTGGGTGCCCCAGTTATTGGCCTCAATGACTCTGGTGGGGCCCGCATTCAGGAAGGAGTGGAGTCCCTCGCTGGATATGCTGACATTTTCTTGAGGAACGTCATGGCCTCTGGGGTTGTTCCTCAGATCTCACTCATCATGGGACCCTGTGCTGGTGGAGCTGTCTACTCCCCTGCCTTAACTGATTTCACATTCATGGTGAAGGATACCTCCTATCTGTTCATCACTGGTCCTGATGTGGTGAAATCTGTCACCAATGAGGATGTGACCCAGGAAGAGCTTGGAGGAGCAAAGACTCACACTGCCGTGTCAGGTGTGGCCCACAGAGCTTTTGAGAATGACATTGATGCCTTGCTGAATCTCAGACAGTTTTTCAACTTCCTCCCCCTCAGTAACAAAGACCCAGCTCCAGTGATTGAGTGCCAGGACCCCAGtgatCGCCTTGTTCCTGGCCTGGACACAGTAGTCCCCTTTGAATCCACTAAAGCCTATGACATGCTGGATATTATTCAGGGTATTGTGGACGAAAGAGAATTCTTTGAAATCATGCCGAGCTATGCCAAGAACATTGTGGTGGGTTTTGCACGAATGAATGGCCGCACTGTCGGGATAGTAGGAAACCAGCCCAAAGTGGCGTCAGGCTGCCTTGATATTAATTCCTCAGTGAAGGGGGCTCGCTTTGTGAGGTTCTGTGATGCCTTCAATATTCCCATTATCACCTTTGTGGATGTTCCTGGATTTCTGCCAGGGACGGCACAAGAGTACGGAGGTATTATCAGACATGGGGCAAAACTGCTGTTTGCTTTTGCAGAAGCTACTATACCAAAAATCACAGTCATCACCAGGAAGGCATATGGGGGTGCCTATGATGTAATGAGCTCCAAGCATTTAAGAGGAGATGTGAACTATGCATGGCCAACAGCTGAGGTTGCAGTGATGGGAGCGaagGGTGCTGTGCAAATCATTTTCAGAGGGAAGGAGAATCAGGAAGAGGCCGAGGCTGAATATGTGGAGAAGTTTGCAAATCCATTCCCAGCCGCTGTCAGggGATTTGTGGATGACATCATTCAACCATCCAGCACCCGAAGGCGAATCTGCCGGGATCTGGAGGTTCTGGcaagcaaaaagcaaacaaaccccTGGAAAAAACATGCCAACATTCCTCTCTAAATGTGTGCCAGAGAAAATGATAGTTTGTAACAGCAGACTCCTCAATTCCTTTTTAAGAAAGGTTGTCTTGTAGATCtttaatacaatcaaataaaaagtttttcaacagga

Function

symbol description
pccb Predicted to enable ligase activity. Is expressed in several structures, including alar plate midbrain region; musculature system; optic tectum; optic vesicle; and pronephros. Human ortholog(s) of this gene implicated in amino acid metabolic disorder and propionic acidemia. Orthologous to human PCCB (propionyl-CoA carboxylase subunit beta).

NR:

description
PREDICTED: propionyl-CoA carboxylase beta chain, mitochondrial-like

GO:

id name namespace
GO:0016874 ligase activity molecular_function

KEGG:

id description
K01966 PCCB, pccB; propionyl-CoA carboxylase beta chain

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009065 True 2393 mRNA 0.48 15 24051750 24062621

Neighbor

gene id symbol gene type direction distance location
AMCG00009063 slc35g2,slc35g2b,LOC108263162,LOC107588046,LOC107687509,LOC103026733 coding downstream 89898 23960599 ~ 23961852 (-)
AMCG00009062 nck1b,nck1,LOC107734380,LOC107683484,LOC107713805,LOC107588047 coding downstream 137292 23894094 ~ 23914458 (-)
AMCG00009057 zic4,LOC107588037,LOC101481722,LOC102208739,LOC100703503,LOC107757405,LOC107557562 coding downstream 395600 23645454 ~ 23656150 (-)
AMCG00009055 si:ch73-206p6.1,LOC107557560,LOC107679633,LOC107739143,LOC108272643 coding downstream 582650 23450545 ~ 23469100 (-)
AMCG00009054 plod2 coding downstream 649258 23378607 ~ 23402492 (-)
AMCG00009067 ppp2r3a coding upstream 13778 24076399 ~ 24088941 (-)
AMCG00009068 NA coding upstream 44584 24107205 ~ 24111579 (-)
AMCG00009071 NA coding upstream 172924 24235545 ~ 24242433 (-)
AMCG00009074 NA coding upstream 202876 24265497 ~ 24293628 (-)
AMCG00009073 fndc3b,LOC105908526,LOC106591582 coding upstream 250533 24313154 ~ 24317576 (-)
G54273 NA non-coding downstream 231960 23817062 ~ 23819790 (-)
G54179 NA non-coding downstream 749065 23302454 ~ 23302685 (-)
G54168 NA non-coding downstream 860255 23180327 ~ 23191495 (-)
G54167 LOC103376870 non-coding downstream 881921 23169439 ~ 23169829 (-)
G54161 NA non-coding downstream 912058 23139455 ~ 23139692 (-)
G54363 NA non-coding upstream 215262 24277883 ~ 24278536 (-)
G54408 NA non-coding upstream 565218 24627839 ~ 24710773 (-)
G54415 NA non-coding upstream 601684 24664305 ~ 24666234 (-)
G54447 NA non-coding upstream 725774 24788395 ~ 24791263 (-)
G54450 NA non-coding upstream 750932 24813553 ~ 24847829 (-)
AMCG00009060 hltf other downstream 188715 23825229 ~ 23863035 (-)
G54003 LOC107575789 other downstream 1868185 22183088 ~ 22183565 (-)
G53809 NA other downstream 3779936 20179799 ~ 20271814 (-)
AMCG00009027 NA other downstream 3989571 20061524 ~ 20062179 (-)
AMCG00009029 NA other downstream 4081474 19961027 ~ 19970276 (-)
G54544 NA other upstream 1090645 25153266 ~ 25156338 (-)
AMCG00009100 NA other upstream 1111056 25173677 ~ 25176378 (-)
AMCG00009106 NA other upstream 1397985 25460606 ~ 25462690 (-)
AMCG00009105 NA other upstream 1467208 25529829 ~ 25531566 (-)
AMCG00009121 NA other upstream 2460012 26522633 ~ 26532410 (-)

Expression


Co-expression Network