AMCG00009068


Basic Information

Item Value
gene id AMCG00009068
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 24107205 ~ 24111579 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009068
ATGGCCGCCACATATCGCATTATAGTGAGCACTGTTAATTGTTACAACAGTGTTGTGATAGACCGTCGTTTCCAGCACACTGTCCATTACTGTAACGGACCCTGTCAGGTCCTTAAACACGGAATTGAGTGTACAGTGGCCCATCGTAGCACCTGCTCAGAGCTGCTGGAAGCCCCTATCGCTTCCGATTCCTGTACCCGTCCTTCAAGTGCCCAGGATATTGGCAATACATTTTCAGCTGTTGAAAATAGCTGTGTTAACCCTGGAGCTACAAGTGAGGATTATCACCAAGTTCTTCCAGGTGCTCCCAGGGTCAAAAAGGGATTATCCATTCAGAGCTCCACCAGCCTTAAAGACATTACAGGAGAGGCTATCAATTTAGCCAGTGGAAAGATCAAGGAGTTCTCTTTTGAAAAGATAAAGTATTCTTCAAGTCATGTTACTTTCAGGAAAGGAAGGAAAGTACGACCAGAGTCCTTCAGCAGAAGGTCCACTGATCTGGATATCATATATGGGCACTTTGGGAATGATGAGAACTGCCCACCTTTCAGCCTGCTGCAGAAGTCGGTCATGGAGGAGCACAAGTTGAGCCGCAGTAGTTCACTGGAGCAAAATATCAACAATGTTGCAACACTGTACCTGAATAGCTTGACCGAGGAGAACCTGATTGCCAGGATCTTGGAAAAGACCAAAGCGGACAGTAATGCCTCGGGTGAGGACATCAAAGCCTGCCTGGACATCCTGCTCAAGTGCTCCGAAGACCTCAAAAAGTGCACTGACATTATCAAGCAGTGCATCAAACGGAAATCCATGGGGGGCGATAGTGACGATTCCACCACTAACCCTGAAATTATATACAGGAACGTCATGGCCAGACTTTCCAGCTACCTTAAGAAACTGCCTTTCGAGTTTGAGCATGGGCAGCCTGGCCGGGCAGAACACAGCGACCTGGCTGAATTGGTGAGCAGCTTGCATGGACTTCAGCAAAGTCCATTTTCTCCTATATTTGGGAACGAGCAGCCCCCCAGGTATGAAGATATAGTCCATTCCCCTCCTTTAACCAAAACTCTACCTCCTTCCTCTCTGTTGGAATCCCAGGAAGCCCCTCGGGACCCAGCAAACAATGTGAAATCAGTCCAAAGCCTTTCCAGCCTGCCATCTTCAACGGCGAACAACACCCAGCAGAATGCCACACCTGCTACTAATAGTTCCACTAGCCTACCTCAAGTCATTACAGTCAACCGCTCCGACAGCTATTCCTCTACAAACTCGTTACTGTCTAGCAGCAATGACAGCATATGCAAGGAATCTATGGAAGCATTGTATATAGAGGAGGATCCTGATATTGGCAAAGTGCTGGACAAGGAACTCAGAGGGGAAGGGAAATTCAGTCTGGGGTTCATGGAGGTAAGACAGTTCCCTAAAAAACCAAGCACTGTTGTAGAAAGCAGTACAGCTGGTGTTAAGAATGTGACTGCATTTAAGCCAAAGATGGAGCCTTATGTGTTGCAAGGAGCCAGCAAGACATACAACCCACCTAAGAATATGACTACAGAGCCCAGGACTTTCCAAGCATCAGGGCAGAGCAGCCATGAGGATGACATTGACAAATTGCTAATGGATTTGGAGTGCCTTTCCAAAAACATAGAGCAAGAGCCATCCGTGAAAGGCAGGAGCCAAGAGCCCAAGAACTGCAGCCAACAGTGCTTGACCTTTAGCTCAGGAACCAAAAGCCATCCTGCTCTGGAAGCCACCTCCTCACTCATGGTCAAGAAGGACACAAGCAGGCATGGTAGCAGCCCAAACGAGGAGGAGGATGGGGCCCTTCTGCTTCGTATCTTGGAAAGCATTGAGAGCTTTGCTCAGGAACTGGTGGAAAGTGGAACAGGCAGGGGAACACAGTCTAGAGAGCGGGAAGTGATGCGACTTCTCCAAGAGACGCTGGCGACCACAGCTAAATCCGAACAGGCATTACACCCAGCCTGCGTCCCTGCCGCTATGAGAGACCCTGGCTCCTCTCTGTTAATTCAGCAGACTCCAGAGGTCATCAGGCCTAACTCCAGTCTAATGAGAATGTTGTGA

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0072350 tricarboxylic acid metabolic process biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0006099 tricarboxylic acid cycle biological_process
GO:0006101 citrate metabolic process biological_process
GO:0009060 aerobic respiration biological_process
GO:0015980 energy derivation by oxidation of organic compounds biological_process
GO:0061061 muscle structure development biological_process
GO:0045333 cellular respiration biological_process

KEGG:

id description
ko00020 Citrate cycle (TCA cycle)

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009068 True 2082 mRNA 0.49 2 24107205 24111579

Neighbor

gene id symbol gene type direction distance location
AMCG00009067 ppp2r3a coding downstream 18264 24076399 ~ 24088941 (-)
AMCG00009065 pccb,LOC106574468,LOC107688488,LOC107709888 coding downstream 44584 24051750 ~ 24062621 (-)
AMCG00009063 slc35g2,slc35g2b,LOC108263162,LOC107588046,LOC107687509,LOC103026733 coding downstream 145353 23960599 ~ 23961852 (-)
AMCG00009062 nck1b,nck1,LOC107734380,LOC107683484,LOC107713805,LOC107588047 coding downstream 192747 23894094 ~ 23914458 (-)
AMCG00009057 zic4,LOC107588037,LOC101481722,LOC102208739,LOC100703503,LOC107757405,LOC107557562 coding downstream 451055 23645454 ~ 23656150 (-)
AMCG00009071 NA coding upstream 123966 24235545 ~ 24242433 (-)
AMCG00009074 NA coding upstream 153918 24265497 ~ 24293628 (-)
AMCG00009073 fndc3b,LOC105908526,LOC106591582 coding upstream 201575 24313154 ~ 24317576 (-)
AMCG00009075 NA coding upstream 284375 24395954 ~ 24429749 (-)
AMCG00009082 NA coding upstream 671931 24783510 ~ 24787089 (-)
G54273 NA non-coding downstream 287415 23817062 ~ 23819790 (-)
G54179 NA non-coding downstream 804520 23302454 ~ 23302685 (-)
G54168 NA non-coding downstream 915710 23180327 ~ 23191495 (-)
G54167 LOC103376870 non-coding downstream 937376 23169439 ~ 23169829 (-)
G54161 NA non-coding downstream 967513 23139455 ~ 23139692 (-)
G54363 NA non-coding upstream 166304 24277883 ~ 24278536 (-)
G54408 NA non-coding upstream 516260 24627839 ~ 24710773 (-)
G54415 NA non-coding upstream 552726 24664305 ~ 24666234 (-)
G54447 NA non-coding upstream 676816 24788395 ~ 24791263 (-)
G54450 NA non-coding upstream 701974 24813553 ~ 24847829 (-)
AMCG00009060 hltf other downstream 244170 23825229 ~ 23863035 (-)
G54003 LOC107575789 other downstream 1923640 22183088 ~ 22183565 (-)
G53809 NA other downstream 3835391 20179799 ~ 20271814 (-)
AMCG00009027 NA other downstream 4045026 20061524 ~ 20062179 (-)
AMCG00009029 NA other downstream 4136929 19961027 ~ 19970276 (-)
G54544 NA other upstream 1041687 25153266 ~ 25156338 (-)
AMCG00009100 NA other upstream 1062098 25173677 ~ 25176378 (-)
AMCG00009106 NA other upstream 1349027 25460606 ~ 25462690 (-)
AMCG00009105 NA other upstream 1418250 25529829 ~ 25531566 (-)
AMCG00009121 NA other upstream 2411054 26522633 ~ 26532410 (-)

Expression


Co-expression Network