AMCG00009073 (fndc3b,LOC105908526,LOC106591582)


Basic Information

Item Value
gene id AMCG00009073
gene name fndc3b,LOC105908526,LOC106591582
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 24313154 ~ 24317576 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009073
GGCCTGCAGAAGTTCCTATGATGTCACCCAATGGTTCCATTCCACCAATTCATGTTCCGCCTGGTTACATCTCCCAGGTCCTTGAAGACAACACTGGGGTGCGACGAGTGGTGGTAACCCCACAGTCTCCTGAGTGCTACCCCCCCAGTTACCCCTCTGCTATCTCTCCCACTCACCACATACCCCCCTACCTTGCCCATCACCCCCACTTCATCCCTGGCTCCCACACAGCCTTCTACCCCCCCGTCACTGGGCATGGGGACATGCCTCCCCAGTTCTTTCCCCAGCACCACCTGCCTCCGACAATATATGGGGAAGAAATCATCCCCGTCTATGGCATGTCCAACTACATAAGCAGGGAGGACCCGTACGGCAAGCCGCAGCCCAAAAAGATCAAAGAGAGACAACTGGACCGGCAGAATCGGCTGAACAGCCCCCCTTCCtccatttacaaaaataatgtgggCTGCACAGCCATGTACAACGGCTATGGCAAGAGTCACAGTGGGGCTGGGGGCGGTGGTGGAGGGAGCCCAGGCATCAAGAAGACGGAGCGTAGAGCCAGGAGCAGCCCCAGGGCCAGCGAGCAAGACGTGCAA

Function

symbol description
fndc3b Enables RNA binding activity. Predicted to act upstream of or within several processes, including negative regulation of osteoblast differentiation; substrate adhesion-dependent cell spreading; and type II pneumocyte differentiation. Predicted to be located in endoplasmic reticulum.

NR:

description
PREDICTED: fibronectin type III domain-containing protein 3B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009073 True 599 mRNA 0.58 3 24313154 24317576

Neighbor

gene id symbol gene type direction distance location
AMCG00009074 NA coding downstream 19526 24265497 ~ 24293628 (-)
AMCG00009071 NA coding downstream 70721 24235545 ~ 24242433 (-)
AMCG00009068 NA coding downstream 201575 24107205 ~ 24111579 (-)
AMCG00009067 ppp2r3a coding downstream 224213 24076399 ~ 24088941 (-)
AMCG00009065 pccb,LOC106574468,LOC107688488,LOC107709888 coding downstream 250533 24051750 ~ 24062621 (-)
AMCG00009075 NA coding upstream 78378 24395954 ~ 24429749 (-)
AMCG00009082 NA coding upstream 465934 24783510 ~ 24787089 (-)
AMCG00009086 NA coding upstream 474826 24792402 ~ 24805280 (-)
AMCG00009093 NA coding upstream 572355 24889931 ~ 24895400 (-)
AMCG00009090 sec62,LOC107684396,LOC107738178,LOC107558802 coding upstream 603651 24921227 ~ 24933161 (-)
G54363 NA non-coding downstream 34618 24277883 ~ 24278536 (-)
G54273 NA non-coding downstream 493364 23817062 ~ 23819790 (-)
G54179 NA non-coding downstream 1010469 23302454 ~ 23302685 (-)
G54168 NA non-coding downstream 1121659 23180327 ~ 23191495 (-)
G54167 LOC103376870 non-coding downstream 1143325 23169439 ~ 23169829 (-)
G54408 NA non-coding upstream 310263 24627839 ~ 24710773 (-)
G54415 NA non-coding upstream 346729 24664305 ~ 24666234 (-)
G54447 NA non-coding upstream 470819 24788395 ~ 24791263 (-)
G54450 NA non-coding upstream 495977 24813553 ~ 24847829 (-)
G54466 NA non-coding upstream 564463 24882039 ~ 24884725 (-)
AMCG00009060 hltf other downstream 450119 23825229 ~ 23863035 (-)
G54003 LOC107575789 other downstream 2129589 22183088 ~ 22183565 (-)
G53809 NA other downstream 4041340 20179799 ~ 20271814 (-)
AMCG00009027 NA other downstream 4250975 20061524 ~ 20062179 (-)
AMCG00009029 NA other downstream 4342878 19961027 ~ 19970276 (-)
G54544 NA other upstream 835690 25153266 ~ 25156338 (-)
AMCG00009100 NA other upstream 856101 25173677 ~ 25176378 (-)
AMCG00009106 NA other upstream 1143030 25460606 ~ 25462690 (-)
AMCG00009105 NA other upstream 1212253 25529829 ~ 25531566 (-)
AMCG00009121 NA other upstream 2205057 26522633 ~ 26532410 (-)

Expression


Co-expression Network